Hello, I was wondering how Galaxy calculates the quality score for NGS data? Is there any documentation I could read on how this is calculated? Thanks! -Amy Boddy
On Thu, Feb 24, 2011 at 8:47 PM, Amy Boddy aboddy@med.wayne.edu wrote:
Hello, I was wondering how Galaxy calculates the quality score for NGS data? Is there any documentation I could read on how this is calculated? Thanks! -Amy Boddy
Which quality score are you talking about? Raw reads? Mappings? If it's FASTQ files you mean, may I suggest:
http://dx.doi.org/10.1093/nar/gkp1137
and
http://en.wikipedia.org/wiki/FASTQ_format
Peter
galaxy-user@lists.galaxyproject.org