Re: [galaxy-user] Fwd: Need a generous help regarding uploading

15 Dec 2010

      Hello Asifullah,

It would be helpful if you would be able to share your history. Please 
note which exact datasets (by number) you are having problems saving.

Use Options -> Share or Publish -> click on the button to Share via link 
and then email that to me.

Thank you,

Jen
Galaxy team

On 12/15/10 7:56 AM, vasu punj wrote:
...
I have done the same it gav eme bam index file when i removed the
extension index or as such it come out to be not right bam file format
as recognized by various tools
Thanks
--- On *Wed, 12/15/10, Jennifer Jackson /<jen@bx.psu.edu>/* wrote:
From: Jennifer Jackson <jen@bx.psu.edu>
    Subject: Re: [galaxy-user] Fwd: Need a generous help regarding uploading
    To: "vasu punj" <punjv@yahoo.com>
    Cc: "galaxy-user@bx.psu.edu" <galaxy-user@bx.psu.edu>
    Date: Wednesday, December 15, 2010, 9:52 AM
Hello Asifullah,
Click on the "save" icon for the dataset to initiate a download. This
    icon is shaped like a little purple disk on the very left side of the
    dataset's box in the right history pane.
Hopefully this is helpful,
Thank you,
Jen
    Galaxy team
On 12/15/10 7:47 AM, vasu punj wrote:
     > Hi,
     > Can we save Bam file from Tophat out put if so how can we do that
    please.
     > Thanks.
     >
     > --- On *Wed, 12/15/10, Jennifer Jackson /<jen@bx.psu.edu
    <http://us.mc1147.mail.yahoo.com/mc/compose?to=jen@bx.psu.edu>>/* wrote:
     >
     >
     > From: Jennifer Jackson <jen@bx.psu.edu
    <http://us.mc1147.mail.yahoo.com/mc/compose?to=jen@bx.psu.edu>>
     > Subject: Re: [galaxy-user] Fwd: Need a generous help regarding
    uploading
     > To: "asifullah khan" <asifullah111@gmail.com
    <http://us.mc1147.mail.yahoo.com/mc/compose?to=asifullah111@gmail.com>>
     > Cc: galaxy-user@bx.psu.edu
    <http://us.mc1147.mail.yahoo.com/mc/compose?to=galaxy-user@bx.psu.edu>
     > Date: Wednesday, December 15, 2010, 9:38 AM
     >
     > Hello Asifullah,
     >
     > The Galaxy tool "Get Data -> Upload File" has instructions for
     > uploading
     > data to the FTP server. We recommend using the 3rd party utility
     > FileZilla as a desktop FTP client.
     >
     > http://file-zilla.com/
     >
     > Hopefully this will get you started,
     >
     > Best!
     >
     > Jen
     > Galaxy team
     >
     > ps: In the future, if you could send questions directly to
     > galaxy-user@bx.psu.edu
    <http://us.mc1147.mail.yahoo.com/mc/compose?to=galaxy-user@bx.psu.edu>
     >
    <http://us.mc1147.mail.yahoo.com/mc/compose?to=galaxy-user@bx.psu.edu>,
     > it would be very helpful for us.
     >
     > On 12/12/10 8:32 AM, Kelly Vincent wrote:
     > >
     > >
     > > Begin forwarded message:
     > >
     > >> *From: *asifullah khan <asifullah111@gmail.com
    <http://us.mc1147.mail.yahoo.com/mc/compose?to=asifullah111@gmail.com>
     >
    <http://us.mc1147.mail.yahoo.com/mc/compose?to=asifullah111@gmail.com>
     > >> <mailto:asifullah111@gmail.com
    <http://us.mc1147.mail.yahoo.com/mc/compose?to=asifullah111@gmail.com>
     >
    <http://us.mc1147.mail.yahoo.com/mc/compose?to=asifullah111@gmail.com>>>
     > >> *Date: *December 12, 2010 11:01:27 AM EST
     > >> *To: *galaxy-user-owner@lists.bx.psu.edu
    <http://us.mc1147.mail.yahoo.com/mc/compose?to=galaxy-user-owner@lists.bx.psu.edu>
     >
    <http://us.mc1147.mail.yahoo.com/mc/compose?to=galaxy-user-owner@lists.bx.psu.edu>
     > >> <mailto:galaxy-user-owner@lists.bx.psu.edu
    <http://us.mc1147.mail.yahoo.com/mc/compose?to=galaxy-user-owner@lists.bx.psu.edu>
     >
    <http://us.mc1147.mail.yahoo.com/mc/compose?to=galaxy-user-owner@lists.bx.psu.edu>>
     > >> *Subject: **Need a generous help regarding uploading*
     > >>
     > >> Dear All,
     > >>
     > >> I am in trouble to upload 1.2Gb illumine data on Galaxy page for
     > >> subsequent assembling and analysis steps. I am basically a
    biologist
     > >> and new regarding utility of modern bioinformatics tools. some one
     > >> have suggested to upload first your data on a http web page
    then it
     > >> would be easy to be uploaded on GALaxy. But it is also not
    possible
     > >> for me as having little computer knowledge. So could some one
     > help me
     > >> generously regarding these issue. I will highly appreciate
     > his/her help.
     > >>
     > >> Regards
     > >> Asifullah Khan
     > >
     > >
     > >
     > > _______________________________________________
     > > galaxy-user mailing list
     > > galaxy-user@lists.bx.psu.edu
    <http://us.mc1147.mail.yahoo.com/mc/compose?to=galaxy-user@lists.bx.psu.edu>
     >
    <http://us.mc1147.mail.yahoo.com/mc/compose?to=galaxy-user@lists.bx.psu.edu>
     > > http://lists.bx.psu.edu/listinfo/galaxy-user
     >
     > --
     > Jennifer Jackson
     > http://usegalaxy.org <http://usegalaxy.org/> <http://usegalaxy.org/>
     > _______________________________________________
     > galaxy-user mailing list
     > galaxy-user@lists.bx.psu.edu
    <http://us.mc1147.mail.yahoo.com/mc/compose?to=galaxy-user@lists.bx.psu.edu>
     >
    <http://us.mc1147.mail.yahoo.com/mc/compose?to=galaxy-user@lists.bx.psu.edu>
     > http://lists.bx.psu.edu/listinfo/galaxy-user
     >
     >
--
    Jennifer Jackson
    http://usegalaxy.org <http://usegalaxy.org/>
-- 
Jennifer Jackson
http://usegalaxy.org

Jennifer Jackson

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