Hi Katie, For genomes that are not available on Galaxy Main (or general questions you might have about Galaxy), it's best to send an email to the galaxy-user mailing list (CC'd now). You can subscribe to the mailing list here http://lists.bx.psu.edu/listinfo/galaxy-user As far as the particular genome you're asking about, until it is to get added, you can upload it under your own account by following these instructions: http://wiki.galaxyproject.org/Support#Custom_reference_genome Hope this helps, Enis On Sat, Nov 9, 2013 at 1:37 AM, Katie Marshall <kmarshall@zoology.ubc.ca>wrote:
Hi,
I'm sorry to bother you, but I'm not entirely certain who to contact. I'm starting up a project looking at gene transcription in Botryllus schlosseri (a tunicate) that was recently genome-sequenced. I would love to have this genome available through Galaxy, and currently under mapping tools it says to "contact Galaxy Team" if my organism isn't listed. There's no link, so if you could please pass me along to the appropriate person, that would be fantastic.
The NCBI listing for B. schlosseri is here: http://www.ncbi.nlm.nih.gov/ bioproject/PRJNA205369
Cheers and thanks, Katie
-- Dr. Katie Marshall Postdoctoral Fellow Department of Zoology University of British Columbia Room 138, Biodiversity Research Centre 6270 University Blvd Vancouver, BC
Hi Katie, I added the genome request to our genome request tracking card: https://trello.com/c/kzVklAIE Using it as a custom genome is definitely the way to go for now. Best, Jen Galaxy team On 11/8/13 10:23 PM, Enis Afgan wrote:
B. schlosseri is here: http://www.ncbi.nlm.nih.gov/bioproject/PRJNA205369
-- Jennifer Hillman-Jackson http://galaxyproject.org
participants (2)
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Enis Afgan
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Jennifer Jackson