The Encode random interval tool works by partitioning user supplied
intervals into the encode region which they overlap (if None, the interval
is discarded). It then randomly assigns intervals of the same lengths as
the input intervals to positions within the Encode region (allowing users
to specify how to deal with overlaps). We do not currently offer this
functionality on a whole genome basis.
I'am wondering if there is a tool for generating random genome sequence
or from a specific region(i.e. all promoter region).I known there is
'random intervals' in 'ENCODE Tools'.But the problem is it seems
restricted to generating random sequence from 'ENCODE Regions' while i'd
prefer whole genenome region.
By the way, what is the statistical model for generating this random
sequence? can i just random generate a series of genome coordinates and
then extract the correponding sequences?
If you had read some research articles descripting the random procedure,
please suggest for me.
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