Hi Danny, A beta GATK pipeline is available on our Test instance at: http://test.g2.bx.psu.edu/ Feedback about the tool suite is welcomed! Best, Jen Galaxy team On 10/27/11 1:08 PM, Muehlschlegel, Jochen D.,M.D. wrote:

Hi,

Do you host GATK on the Galaxy server? If not, is there a way to call SNPs from NGS (RNA-seq) data using Galaxy ?

Thanks

Danny

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