Dear Team Galaxy Is there a simple way to filter PhiX control from a sample set? S -- Scott Tighe Senior Core Laboratory Research Staff Advanced Genome Technologies Core NextGen Sequencing/Flow Cytometry University of Vermont and Vermont Cancer Center 149 Beaumont ave Health Science Research Facility 303/305 Burlington Vermont 05405 802-656-2482 (AGTC)
Hi Scott, This genome is available in most mapping tools, so a positive match could be used to identify the control. But if you just want to leave it behind, control should fall out during mapping against the sample's target genome (if available). Best, Jen Galaxy team On 4/4/14 12:33 PM, Scott Tighe wrote:
Dear Team Galaxy
Is there a simple way to filter PhiX control from a sample set?
S
-- Jennifer Hillman-Jackson http://galaxyproject.org
participants (2)
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Jennifer Jackson -
Scott Tighe