How to merge Fastq groomer files in Galaxy?
Dear Galaxy users, Does anyone know how to merge several FASTQ groomer files by using Galaxy? If not, is there any other program that can achieve this? The size of one FASTQ groomer file is around 1GB. Thank you! Best regards, Xiefan Fang, Ph.D. Postdoctoral associate Department of Pediatrics College of Medicine University of Florida Phone: 352-294-5675 Email: xiefanfang@ufl.edu
On Tue, Oct 16, 2012 at 8:22 PM, Fang,Xiefan <xiefanfang@ufl.edu> wrote:
Dear Galaxy users,
Does anyone know how to merge several FASTQ groomer files by using Galaxy? If not, is there any other program that can achieve this? The size of one FASTQ groomer file is around 1GB. Thank you!
The Galaxy tool "Concatenate datasets tail-to-head" under "Text Manipulation" should work. I'm assuming you just need a simple concatenation of individual FASTQ files, not a more complex merge dealing with duplicates or sorting. Peter
participants (2)
-
Fang,Xiefan -
Peter Cock