Re: [galaxy-user] galaxy-user Digest, Vol 57, Issue 26
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Today's Topics:
1. Convert SOLiD data (lishiyong) 2. Re: biomart plugin (Greg Von Kuster) 3. Re: Convert SOLiD data (Ryan Golhar) 4. Re: Convert SOLiD data (Jennifer Jackson) 5. Re: Sort & index SAM-files automatically (Ryan Golhar)
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Message: 1 Date: Mon, 28 Mar 2011 11:35:15 +0800 From: "lishiyong" <lishiyong@genomics.org.cn> To: "galaxy-user" <galaxy-user@lists.bx.psu.edu> Subject: [galaxy-user] Convert SOLiD data Message-ID: <201103281135102031338@genomics.org.cn> Content-Type: text/plain; charset="us-ascii"
Hello! I convert SOLiD csfasta- and qual-files to fastq-files ,I want to use the fastq-files to do denovo with SOAPdenovo.because the SOLiD de novo accessory tools Require large memory .But ,I find that there're some question for the converting . for example: T02023221102101032002002030011232121133222233311200 ��> AGAGTGGCCAGCACATGAAGAAGATAACCGTGCGCCTTGGGGTTTCCGAA
But I think it should to be TCCTAGACAAGTTGGCTTTCCCTTAAACAGCTGACATAGAGATATGTCCC Who knows the reason about this. 2011-03-28
lishiyong
closed On 3/28/11 7:38 AM, Brian Lam wrote:
galaxy-user-request@lists.bx.psu.edu wrote:
Send galaxy-user mailing list submissions to galaxy-user@lists.bx.psu.edu
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You can reach the person managing the list at galaxy-user-owner@lists.bx.psu.edu
When replying, please edit your Subject line so it is more specific than "Re: Contents of galaxy-user digest..."
HEY! This is important! If you reply to a thread in a digest, please 1. Change the subject of your response from "Galaxy-user Digest Vol ..." to the original subject for the thread. 2. Strip out everything else in the digest that is not part of the thread you are responding to.
Why? 1. This will keep the subject meaningful. People will have some idea from the subject line if they should read it or not. 2. Not doing this greatly increases the number of emails that match search queries, but that aren't actually informative.
Today's Topics:
1. Convert SOLiD data (lishiyong) 2. Re: biomart plugin (Greg Von Kuster) 3. Re: Convert SOLiD data (Ryan Golhar) 4. Re: Convert SOLiD data (Jennifer Jackson) 5. Re: Sort& index SAM-files automatically (Ryan Golhar)
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Message: 1 Date: Mon, 28 Mar 2011 11:35:15 +0800 From: "lishiyong"<lishiyong@genomics.org.cn> To: "galaxy-user"<galaxy-user@lists.bx.psu.edu> Subject: [galaxy-user] Convert SOLiD data Message-ID:<201103281135102031338@genomics.org.cn> Content-Type: text/plain; charset="us-ascii"
Hello! I convert SOLiD csfasta- and qual-files to fastq-files ,I want to use the fastq-files to do denovo with SOAPdenovo.because the SOLiD de novo accessory tools Require large memory .But ,I find that there're some question for the converting . for example: T02023221102101032002002030011232121133222233311200 ��> AGAGTGGCCAGCACATGAAGAAGATAACCGTGCGCCTTGGGGTTTCCGAA
But I think it should to be TCCTAGACAAGTTGGCTTTCCCTTAAACAGCTGACATAGAGATATGTCCC Who knows the reason about this. 2011-03-28
lishiyong
participants (2)
-
Brian Lam -
Jennifer Jackson