Data Libraries Problems

2 Jul 2010

      In my latest pull from the galaxy update server, something has caused my
instance to act up.  I'm getting an error when trying to upload data into
libraries.  This is the text based error:

URL: http://variome.chop.edu:8082/library_common/upload_library_dataset
File
'/home/perin/galaxy_dist2/eggs/WebError-0.8a-py2.6.egg/weberror/evalexception/middleware.py',
line 364 in respond
  app_iter = self.application(environ, detect_start_response)
File
'/home/perin/galaxy_dist2/eggs/Paste-1.6-py2.6.egg/paste/debug/prints.py',
line 98 in __call__
  environ, self.app)
File '/home/perin/galaxy_dist2/eggs/Paste-1.6-py2.6.egg/paste/wsgilib.py',
line 539 in intercept_output
  app_iter = application(environ, replacement_start_response)
File '/home/perin/galaxy_dist2/eggs/Paste-1.6-py2.6.egg/paste/recursive.py',
line 80 in __call__
  return self.application(environ, start_response)
File
'/home/perin/galaxy_dist2/eggs/Paste-1.6-py2.6.egg/paste/httpexceptions.py',
line 632 in __call__
  return self.application(environ, start_response)
File '/home/perin/galaxy_dist2/lib/galaxy/web/framework/base.py', line 145
in __call__
  body = method( trans, **kwargs )
File
'/home/perin/galaxy_dist2/lib/galaxy/web/controllers/library_common.py',
line 978 in upload_library_dataset
  **kwd )
File
'/home/perin/galaxy_dist2/lib/galaxy/web/controllers/library_common.py',
line 1158 in upload_dataset
  message=util.sanitize_text( message ),
File '/home/perin/galaxy_dist2/lib/galaxy/util/__init__.py', line 138 in
sanitize_text
  for c in text:
TypeError: 'NoneType' object is not iterable

Strangely, the data gets queued up anyway, if you go back to the library,
and you can even see the first few lines of the file in the preview, but it
remains queued and never fully becomes available.  Not sure what's going on,
so was hoping for any suggestions.

I just updated to Postgresql as well, but that didn't change the problem.

Thanks.

Juan

juan perin

Greg Von Kuster

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