file conversion for viewing
This is probably a 'newbie' question, but after many years, I'm getting caught up in sequence assembly analysis again. I've been looking around for a way to view *.ace file in a genome browser such as the UCSC or IGV? Is there any straightforward way to view assemblies from Illumina or 454 reads which are in *.ace format in the .bed or .wig formats? Thanks in advance! Jim Cavalcoli Center for Computational Medicine and Biology, University of Michigan
Hi Jim, Thank you for using Galaxy. However, at this point we do not plan to write a converter for ace format. Hopefully in the future we will be able to support more formats. Sincerely, Wen-Yu Chung Galaxy team On Nov 9, 2008, at 12:05 PM, James D Cavalcoli wrote:
This is probably a 'newbie' question, but after many years, I'm getting caught up in sequence assembly analysis again.
I've been looking around for a way to view *.ace file in a genome browser such as the UCSC or IGV? Is there any straightforward way to view assemblies from Illumina or 454 reads which are in *.ace format in the .bed or .wig formats?
Thanks in advance!
Jim Cavalcoli Center for Computational Medicine and Biology, University of Michigan _______________________________________________ galaxy-user mailing list galaxy-user@bx.psu.edu http://mail.bx.psu.edu/cgi-bin/mailman/listinfo/galaxy-user
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James D Cavalcoli
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WENYU CHUNG