file conversion for viewing
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This is probably a 'newbie' question, but after many years, I'm getting caught up in sequence assembly analysis again. I've been looking around for a way to view *.ace file in a genome browser such as the UCSC or IGV? Is there any straightforward way to view assemblies from Illumina or 454 reads which are in *.ace format in the .bed or .wig formats? Thanks in advance! Jim Cavalcoli Center for Computational Medicine and Biology, University of Michigan
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Hi Jim, Thank you for using Galaxy. However, at this point we do not plan to write a converter for ace format. Hopefully in the future we will be able to support more formats. Sincerely, Wen-Yu Chung Galaxy team On Nov 9, 2008, at 12:05 PM, James D Cavalcoli wrote:
This is probably a 'newbie' question, but after many years, I'm getting caught up in sequence assembly analysis again.
I've been looking around for a way to view *.ace file in a genome browser such as the UCSC or IGV? Is there any straightforward way to view assemblies from Illumina or 454 reads which are in *.ace format in the .bed or .wig formats?
Thanks in advance!
Jim Cavalcoli Center for Computational Medicine and Biology, University of Michigan _______________________________________________ galaxy-user mailing list galaxy-user@bx.psu.edu http://mail.bx.psu.edu/cgi-bin/mailman/listinfo/galaxy-user
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James D Cavalcoli
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WENYU CHUNG