Hello Ela, To set up your local Galaxy instance to display at UCSC, please follow the instructions on this wiki: https://bitbucket.org/galaxy/galaxy-central/wiki/ExternalDisplayApplications... If you would like more help, please let us know. Best, Jen Galaxy team ps: Thanks Hiram for passing this on so we could help Ela! For next time Ela, a good mailing list to ask technical questions about Galaxy local instances is "galaxy-dev@list.bx.psu.edu". The growing development community will often have many helpful suggestions when local installation/cluster/cloud issues pop up. For scientific data and tool questions in general or those based on a history at Galaxy main, this list "galaxy-user@lists.bx.psu.edu" is the best choice. On 3/31/11 7:58 AM, Hiram Clawson wrote:

Good Morning Dr. Hunt:

Can you please clarify what upload function from galaxy you are trying to perform ? Perhaps the galaxy user help email list could direct you to advice on this subject ? (copied on this email) The Ensembl genome browser accepts the same types of upload tracks as does the UCSC genome browser.

--Hiram

----- Original Message ----- From: "Pustulka-Hunt Elzbieta (SystemsX.ch)"<ela.hunt@systemsx.ch> To: genome@soe.ucsc.edu Sent: Thursday, March 31, 2011 5:19:55 AM Subject: [Genome] USCS browser, access from Galaxy

Connection refused Couldn't connect to 127.0.0.1 8080 Couldn't open http://127.0.0.1:8080/root/display_as?id=27&display_app=ucsc&authz_method=display_at

Hi, I have a local installation of Galaxy. Is it at all possible to upload (easily) data from Galaxy to your browser? I have no trouble uploading an extra track to Ensembl. Could you support such access? Regards Ela

------------------------------------------------------------------------------------------------ Dr Ela Hunt SyBIT Deputy Project Manager Clausiusstr. 45, CLP D 2 ETHZ, CH-8092 Zurich +41 44 632 93 37 https://wiki.systemsx.ch/display/~ela.hunt@systemsx.ch/Dr+Ela+Hunt ___________________________________________________________ The Galaxy User list should be used for the discussion of Galaxy analysis and other features on the public server at usegalaxy.org. Please keep all replies on the list by using "reply all" in your mail client. For discussion of local Galaxy instances and the Galaxy source code, please use the Galaxy Development list:

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