visualization of bed-fromat pasted text
Hi, When loading pasted text with lines in bed format (chrom, start, end), I find that galaxy can't display it in the visualization. Does the visualization need specific bed format , with all the columns (~13)? Are gff format/Sam format files supported? With Regards, Sridhar Postdoctoral Research Associate Nutrition and Health Sciences University of Nebraska-Lincoln
Excerpts from Sridhar A Malkaram's message of Wed Dec 01 23:30:29 +0000 2010:
When loading pasted text with lines in bed format (chrom, start, end), I find that galaxy can't display it in the visualization.
Does the visualization need specific bed format , with all the columns (~13)? Are gff format/Sam format files supported?
What behavior are you seeing? An error or just nothing displayed? Galaxy should support 3 column bed, as well as GFF for viz. SAM must be converted to BAM for display right now.
participants (2)
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James Taylor -
Sridhar A Malkaram