Editing workflows : Server error ?
Dear all, I didn't use Galaxy for some weeks now. When I tried to edit some of my workflows today I received an error message "Server error" instead. Is there any problem with the workflow editor or to edit big workflows (>40 steps) recently ? It seems that I can only edit workflows with a limited number of steps. Thanks a lot, Sandrine
Hi Sandrine, Would you have time to share one of these workflows that produces a Server error, so that we can examine your exact case and determine the root cause of the problems? To do this, on the "Your workflows" page, use the pull-down menu to select "Share or Publish", generate a share link, and email that back to me directly (not to the entire list). Also sending the exact steps that you know will produce a server error would be appreciated. Thank you for reporting the issue and I will watch for your reply, Best, Jen Galaxy team On 4/13/12 10:50 AM, Sandrine Hughes wrote:
Dear all,
I didn't use Galaxy for some weeks now. When I tried to edit some of my workflows today I received an error message "Server error" instead. Is there any problem with the workflow editor or to edit big workflows (>40 steps) recently ? It seems that I can only edit workflows with a limited number of steps.
Thanks a lot,
Sandrine ___________________________________________________________ The Galaxy User list should be used for the discussion of Galaxy analysis and other features on the public server at usegalaxy.org. Please keep all replies on the list by using "reply all" in your mail client. For discussion of local Galaxy instances and the Galaxy source code, please use the Galaxy Development list:
http://lists.bx.psu.edu/listinfo/galaxy-dev
To manage your subscriptions to this and other Galaxy lists, please use the interface at:
-- Jennifer Jackson http://galaxyproject.org
Hi Sandrine, Thanks for sending the workflow link. A correction to this specific problem has been made (changeset 7038:1fdcce63a06f at https://bitbucket.org/galaxy/galaxy-central). This will reach the public main instance at the next update (likely within a week or so). The version of Galaxy running on the public instance can be found on the home page (http://usegalaxy.org) under the quickie scroll. Right now it is: "Galaxy build: $Rev 6986:4527ed1eb175$". Please note that workflows can cause errors when they contain a tool/tool version that is not active on the Galaxy instance being used (this isn't new, but it seemed worth mentioning). This is an open development area for us. For now, use the available tool set to avoid the issue. We appreciate the feedback! Please let us know if you have problems after the update (any rev at or over 7038), Best, Jen Galaxy team On 4/13/12 10:50 AM, Sandrine Hughes wrote:
Dear all,
I didn't use Galaxy for some weeks now. When I tried to edit some of my workflows today I received an error message "Server error" instead. Is there any problem with the workflow editor or to edit big workflows (>40 steps) recently ? It seems that I can only edit workflows with a limited number of steps.
Thanks a lot,
Sandrine ___________________________________________________________ The Galaxy User list should be used for the discussion of Galaxy analysis and other features on the public server at usegalaxy.org. Please keep all replies on the list by using "reply all" in your mail client. For discussion of local Galaxy instances and the Galaxy source code, please use the Galaxy Development list:
http://lists.bx.psu.edu/listinfo/galaxy-dev
To manage your subscriptions to this and other Galaxy lists, please use the interface at:
-- Jennifer Jackson http://galaxyproject.org
Hi Jen, Thanks a lot for your help. I will let you know if I have problems after the update. All the best, Sandrine 2012/4/16 Jennifer Jackson <jen@bx.psu.edu>:
Hi Sandrine,
Thanks for sending the workflow link. A correction to this specific problem has been made (changeset 7038:1fdcce63a06f at https://bitbucket.org/galaxy/galaxy-central). This will reach the public main instance at the next update (likely within a week or so).
The version of Galaxy running on the public instance can be found on the home page (http://usegalaxy.org) under the quickie scroll. Right now it is: "Galaxy build: $Rev 6986:4527ed1eb175$".
Please note that workflows can cause errors when they contain a tool/tool version that is not active on the Galaxy instance being used (this isn't new, but it seemed worth mentioning). This is an open development area for us. For now, use the available tool set to avoid the issue.
We appreciate the feedback! Please let us know if you have problems after the update (any rev at or over 7038),
Best,
Jen Galaxy team
On 4/13/12 10:50 AM, Sandrine Hughes wrote:
Dear all,
I didn't use Galaxy for some weeks now. When I tried to edit some of my workflows today I received an error message "Server error" instead. Is there any problem with the workflow editor or to edit big workflows (>40 steps) recently ? It seems that I can only edit workflows with a limited number of steps.
Thanks a lot,
Sandrine ___________________________________________________________ The Galaxy User list should be used for the discussion of Galaxy analysis and other features on the public server at usegalaxy.org. Please keep all replies on the list by using "reply all" in your mail client. For discussion of local Galaxy instances and the Galaxy source code, please use the Galaxy Development list:
http://lists.bx.psu.edu/listinfo/galaxy-dev
To manage your subscriptions to this and other Galaxy lists, please use the interface at:
-- Jennifer Jackson http://galaxyproject.org
participants (2)
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Jennifer Jackson -
Sandrine Hughes