Hello,

I am just starting to use galaxy, and I was wondering if there is a simple way to search genome wide for clustering of custom transcription binding sites (preferentially with weight matrixes). All other programs (~10) I have used till so far have their limitations, either the length of the sequence they can handle is rather limited, they use only in house transcription factor binding sites or they are not able to check for evolutionary conservation.

Thanks,

Tony

Tony Oosterveen Karolinska Institute Stockholm Sweden