Hello Sheena, Our apologies, Cufflinks was updated to version 1.3.0 this week and we did a poor job of giving notice to our community. You can expect to see a tweet and a news item today and an updated wiki by the end of the week. Again, we are very sorry that you had to discover this on your own in the middle of an analysis project. We appreciate the feedback and will be more timely with notice about tool updates on the Main public server going forward. Sincerely, Jen Galaxy team On 1/12/12 9:18 AM, Scroggins, Sheena wrote:

Hi, I’ve been running some RNA seq data through the Cufflinks tools on Galaxy this week. I noticed today that some of my post processing didn’t work right. After digging deeper, I see that some of my samples ran through cufflinks 1.0.3 and others say 1.3.0. Did Cufflinks get updated this week? Is there a place to see when these updates take place? The twitter feed mentions other tools and the Wiki doesn’t list these as being updated. Thanks, *Sheena *

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