There's a picard sam to fastq converter which AFAIK works on bams too:

https://main.g2.bx.psu.edu/tool_runner?tool_id=picard_SamToFastq

On Sat, May 26, 2012 at 9:48 AM, William M. Strauss cyclotouriste@mac.com wrote:

I have a bunch of BAM files that I need to convert to FASTQ, are there such tools in Galaxy?

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