Hello, How to do this will depend on the target genome and available annotation tracks. The best people to provide the query help are the UCSC Genome Browser team at http://genome.ucsc.edu/contacts.html. Once the query is worked out, it can be run from within Galaxy by following the links "Get Data -> UCSC Main". The output will be sent back to Galaxy as a dataset in the active history. Best, Jen Galaxy team On 7/17/12 3:33 AM, i b wrote:

Hi, is there a way to create a jobin my history from UCSC genome browser that contains ONLY genes encoding for ONLY cell surface proteins? How can I do that?

Thanks a lot! ngs-ib ___________________________________________________________ The Galaxy User list should be used for the discussion of Galaxy analysis and other features on the public server at usegalaxy.org. Please keep all replies on the list by using "reply all" in your mail client. For discussion of local Galaxy instances and the Galaxy source code, please use the Galaxy Development list:

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