Hello, I'm trying to determine if Galaxy will work with Xgrid to set up a small cluster of Mac's for next-gen sequencing projects. I saw on http://wiki.g2.bx.psu.edu/Admin/Config/Performance/Production%20Server that Galaxy supports Torque PBS or Sun Grid. I don't think that Sun Grid runs on Snow Leopard and I don't know about Torque. Snow Leopard already comes with Xgrid so I was hoping to use it. Thank you for your help, Paul Cantalupo University of Pittsburgh
I'm no expert on MacOS but since Xgrid seems to have an opensource DRMAA implementation, it *might* be possible (with some integration/programming efforts): http://edbaskerville.com/2006/08/22/xgriddrmaa-011-with-examples/ This blog author might help you if you run into issues.. Hope that helps ! On 2011-08-16 22:26, Paul Cantalupo wrote:
Hello,
I'm trying to determine if Galaxy will work with Xgrid to set up a small cluster of Mac's for next-gen sequencing projects. I saw on http://wiki.g2.bx.psu.edu/Admin/Config/Performance/Production%20Server that Galaxy supports Torque PBS or Sun Grid. I don't think that Sun Grid runs on Snow Leopard and I don't know about Torque. Snow Leopard already comes with Xgrid so I was hoping to use it.
Thank you for your help,
Paul Cantalupo University of Pittsburgh ___________________________________________________________ The Galaxy User list should be used for the discussion of Galaxy analysis and other features on the public server at usegalaxy.org. Please keep all replies on the list by using "reply all" in your mail client. For discussion of local Galaxy instances and the Galaxy source code, please use the Galaxy Development list:
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Hi Paul, If you manage to get Xgrid working with galaxy, please share your success, as I would love to try it. But know that you can use SGE on Mac OS X. I was able to get it working by following this blog post and screencast: http://www.bioteam.net/2010/02/grid-engine-6-2-on-mac-os-x/ I tried to compile SGE by myself, but couldn't, so I used this binaries: http://biote.am/sge/ --Carlos On Fri, Aug 19, 2011 at 4:14 AM, Roman Valls <brainstorm@nopcode.org> wrote:
I'm no expert on MacOS but since Xgrid seems to have an opensource DRMAA implementation, it *might* be possible (with some integration/programming efforts):
http://edbaskerville.com/2006/08/22/xgriddrmaa-011-with-examples/
This blog author might help you if you run into issues..
Hope that helps !
On 2011-08-16 22:26, Paul Cantalupo wrote:
Hello,
I'm trying to determine if Galaxy will work with Xgrid to set up a small cluster of Mac's for next-gen sequencing projects. I saw on http://wiki.g2.bx.psu.edu/Admin/Config/Performance/Production%20Server that Galaxy supports Torque PBS or Sun Grid. I don't think that Sun Grid runs on Snow Leopard and I don't know about Torque. Snow Leopard already comes with Xgrid so I was hoping to use it.
Thank you for your help,
Paul Cantalupo University of Pittsburgh ___________________________________________________________ The Galaxy User list should be used for the discussion of Galaxy analysis and other features on the public server at usegalaxy.org. Please keep all replies on the list by using "reply all" in your mail client. For discussion of local Galaxy instances and the Galaxy source code, please use the Galaxy Development list:
http://lists.bx.psu.edu/listinfo/galaxy-dev
To manage your subscriptions to this and other Galaxy lists, please use the interface at:
The Galaxy User list should be used for the discussion of Galaxy analysis and other features on the public server at usegalaxy.org. Please keep all replies on the list by using "reply all" in your mail client. For discussion of local Galaxy instances and the Galaxy source code, please use the Galaxy Development list:
http://lists.bx.psu.edu/listinfo/galaxy-dev
To manage your subscriptions to this and other Galaxy lists, please use the interface at:
participants (3)
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Carlos Borroto -
Paul Cantalupo -
Roman Valls