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Hi Dear
Is there anybody whom I can share my data with? I have an important question that I tried
to answer, but I could not. Please see the attachment first, and let us see the first
read in the first row. I need to know how many times I have this read in the whole data.
Do I have to count all reads manually to know the number of this read? It would take a
long time to count 11 million reads. Thank you
Attachments:
- Seethisformat.png (image/png — 463.8 KB)
- attachment.htm (text/html — 1.9 KB)
On Aug 3, 2011, at 12:49 AM, Addwebi, Tarek wrote:
Hi Dear
Is there anybody whom I can share my data with? I have an important question that I tried
to answer, but I could not. Please see the attachment first, and let us see the first
read in the first row. I need to know how many times I have this read in the whole data.
Do I have to count all reads manually to know the number of this read? It would take a
long time to count 11 million reads. Thank you
The read name information seems not
to be in the file.
If you want a histogram of the read counts you could Count (Statistics) of the 5. column.
If vou want a histogram of the mapped positions you could Count (Statistics) on the first
4 columns.
Afterwards you can graph it as a histogram (Graph/Display Data)
A subject line would also be helpful in the future.
HTH,
ido
3825
days inactive
3826
days old
galaxy-user@lists.galaxyproject.org
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Addwebi, Tarek -
Ido Tamir