Hello, The quickest way to use a new, small genome such as this one is use it as a custom reference genome with the tool. Instructions are here: http://wiki.galaxyproject.org/Support#Custom_reference_genome Best, Jen Galaxy team On 2/13/13 7:18 AM, Murphy, Caitlin N wrote:

I'm trying to map a series of short sequencing reads from a clinical isolate of Klebsiella pneumoniae to the Klebsiella pneumoniae MGH 78578 genome which is found on NCBI. This reference genome is not listed under mapping Lastz, which it says I should contact the galaxy team if that is the case. I'm new at all this and trying to upload the reference genome myself, but I am new at all this and any help would be amazing.

Thanks, Caitlin Murphy

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