Illumina Methylation tool in toolshed
Hi, This is my third post regarding this matter but however I didn't get any reply. I am trying to find a tool for r Illumina Methylation. Is there any available on the tool shed or test tool shed? Thanks, Sachit
Hi Sachit, not in the toolshed but you can find a start here: https://github.com/bgruening/galaxytools/tree/master/illumina_methylation_an... its for the 450k chips, I have also some tools for WGMA if you are interested. Cheers, Bjoern
Hi,
This is my third post regarding this matter but however I didn't get any reply. I am trying to find a tool for r Illumina Methylation. Is there any available on the tool shed or test tool shed?
Thanks,
Sachit
Hi Bjoern, Thank you for your reply. To be precise I am looking for a wrapper of * lumi. *http://www.bioconductor.org/packages/2.12/bioc/html/lumi.html Do we have that in main tool shed or test tool shed or in github? Thanks, Sachit On Mon, Jul 29, 2013 at 2:53 PM, Bjoern Gruening < bjoern.gruening@pharmazie.uni-freiburg.de> wrote:
Hi Sachit,
not in the toolshed but you can find a start here:
https://github.com/bgruening/galaxytools/tree/master/illumina_methylation_an...
its for the 450k chips, I have also some tools for WGMA if you are interested.
Cheers, Bjoern
Hi,
This is my third post regarding this matter but however I didn't get any reply. I am trying to find a tool for r Illumina Methylation. Is there any available on the tool shed or test tool shed?
Thanks,
Sachit
Not that I know of, mine is wrapping IMA. cheers, Bjoern
Hi Bjoern,
Thank you for your reply. To be precise I am looking for a wrapper of * lumi.
*http://www.bioconductor.org/packages/2.12/bioc/html/lumi.html
Do we have that in main tool shed or test tool shed or in github?
Thanks,
Sachit
On Mon, Jul 29, 2013 at 2:53 PM, Bjoern Gruening < bjoern.gruening@pharmazie.uni-freiburg.de> wrote:
Hi Sachit,
not in the toolshed but you can find a start here:
https://github.com/bgruening/galaxytools/tree/master/illumina_methylation_an...
its for the 450k chips, I have also some tools for WGMA
if
you are interested.
Cheers, Bjoern
Hi,
This is my third post regarding this matter but however I didn't get any reply. I am trying to find a tool for r Illumina Methylation. Is there any available on the tool shed or test tool shed?
Thanks,
Sachit
participants (2)
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Bjoern Gruening
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Sachit Adhikari