We know people like weblogo: http://weblogo.berkeley.edu/ And I recently started using Icelogo: http://iomics.ugent.be/icelogoserver/main.html But there are others out there, I know. Mary -----Original Message----- From: galaxy-user-bounces@lists.bx.psu.edu [mailto:galaxy-user-bounces@lists.bx.psu.edu] On Behalf Of Anton Nekrutenko Sent: Tuesday, March 23, 2010 2:31 PM To: Erick Antezana Cc: galaxy-user@bx.psu.edu Subject: Re: [galaxy-user] Sequence logo Erick: Not at the moment. Do you have any in mind? a. On Mar 23, 2010, at 6:33 AM, Erick Antezana wrote:

Hi,

is there any Galaxy tool supporting the display of "sequence logos" (http://en.wikipedia.org/wiki/Sequence_logo) ?

thanks, Erick _______________________________________________ galaxy-user mailing list galaxy-user@lists.bx.psu.edu http://lists.bx.psu.edu/listinfo/galaxy-user

Anton Nekrutenko http://nekrut.bx.psu.edu http://usegalaxy.org _______________________________________________ galaxy-user mailing list galaxy-user@lists.bx.psu.edu http://lists.bx.psu.edu/listinfo/galaxy-user

Hi, iceLogo looks indeed very promising; however, in terms of integration to Galaxy, WebLogo (http://code.google.com/p/weblogo/) seems to be much more straightforward? cheers, Erick On 23 March 2010 23:59, Pieter Neerincx <pieter.neerincx@gmail.com> wrote:

I can recommend iceLogo too. Kind of sequence logos on steroids :). It's a pretty young project and I found some graphical glitches in the interface, but the developers respond very quickly :). They also offer iceLogo as a web service that you can call remotely...

Cheers,

Pi

On Mar 23, 2010, at 8:07 PM, Mary Mangan wrote:

...

We know people like weblogo: http://weblogo.berkeley.edu/

And I recently started using Icelogo: http://iomics.ugent.be/icelogoserver/main.html

But there are others out there, I know.

Mary

-----Original Message----- From: galaxy-user-bounces@lists.bx.psu.edu [mailto:galaxy-user-bounces@lists.bx.psu.edu] On Behalf Of Anton Nekrutenko Sent: Tuesday, March 23, 2010 2:31 PM To: Erick Antezana Cc: galaxy-user@bx.psu.edu Subject: Re: [galaxy-user] Sequence logo

Erick:

Not at the moment. Do you have any in mind?

a.

On Mar 23, 2010, at 6:33 AM, Erick Antezana wrote:

...

Hi,

is there any Galaxy tool supporting the display of "sequence logos" (http://en.wikipedia.org/wiki/Sequence_logo) ?

thanks, Erick _______________________________________________ galaxy-user mailing list galaxy-user@lists.bx.psu.edu http://lists.bx.psu.edu/listinfo/galaxy-user

Anton Nekrutenko http://nekrut.bx.psu.edu http://usegalaxy.org

_______________________________________________ galaxy-user mailing list galaxy-user@lists.bx.psu.edu http://lists.bx.psu.edu/listinfo/galaxy-user

_______________________________________________ galaxy-user mailing list galaxy-user@lists.bx.psu.edu http://lists.bx.psu.edu/listinfo/galaxy-user

------------------------------------------------------------- mobile: +31 6 143 66 783 e-mail: pieter.neerincx@gmail.com skype:  pieter.online -------------------------------------------------------------

_______________________________________________ galaxy-user mailing list galaxy-user@lists.bx.psu.edu http://lists.bx.psu.edu/listinfo/galaxy-user

Hi Steve, J. Taylor (Galaxy team) created this wiki location to house such type of efforts: http://bitbucket.org/galaxy/galaxy-central/wiki/ThirdPartyTools cheers, Erick On 24 March 2010 09:25, Steve Taylor <stephen.taylor@imm.ox.ac.uk> wrote:

Hi,

Just out of interest, is there a repository/Wiki page where all the XML conf files for apps can be submitted? A Weblogo interface is a good example of something that would benefit lots of people. I am sure there will be lots of others instances of third party apps developed outside the main Galaxy team in future (especially as Galaxy takes off!).

Steve

...

iceLogo looks indeed very promising; however, in terms of integration to Galaxy, WebLogo (http://code.google.com/p/weblogo/) seems to be much more straightforward?

cheers, Erick

On 23 March 2010 23:59, Pieter Neerincx <pieter.neerincx@gmail.com> wrote:

...

I can recommend iceLogo too. Kind of sequence logos on steroids :). It's a pretty young project and I found some graphical glitches in the interface, but the developers respond very quickly :). They also offer iceLogo as a web service that you can call remotely...

Cheers,

Pi

On Mar 23, 2010, at 8:07 PM, Mary Mangan wrote:

...

We know people like weblogo: http://weblogo.berkeley.edu/

And I recently started using Icelogo: http://iomics.ugent.be/icelogoserver/main.html

But there are others out there, I know.

Mary

-----Original Message----- From: galaxy-user-bounces@lists.bx.psu.edu [mailto:galaxy-user-bounces@lists.bx.psu.edu] On Behalf Of Anton Nekrutenko Sent: Tuesday, March 23, 2010 2:31 PM To: Erick Antezana Cc: galaxy-user@bx.psu.edu Subject: Re: [galaxy-user] Sequence logo

Erick:

Not at the moment. Do you have any in mind?

a.

On Mar 23, 2010, at 6:33 AM, Erick Antezana wrote:

...

Hi,

is there any Galaxy tool supporting the display of "sequence logos" (http://en.wikipedia.org/wiki/Sequence_logo) ?

thanks, Erick _______________________________________________ galaxy-user mailing list galaxy-user@lists.bx.psu.edu http://lists.bx.psu.edu/listinfo/galaxy-user

Anton Nekrutenko http://nekrut.bx.psu.edu http://usegalaxy.org

_______________________________________________ galaxy-user mailing list galaxy-user@lists.bx.psu.edu http://lists.bx.psu.edu/listinfo/galaxy-user

_______________________________________________ galaxy-user mailing list galaxy-user@lists.bx.psu.edu http://lists.bx.psu.edu/listinfo/galaxy-user

------------------------------------------------------------- mobile: +31 6 143 66 783 e-mail: pieter.neerincx@gmail.com skype:  pieter.online -------------------------------------------------------------

_______________________________________________ galaxy-user mailing list galaxy-user@lists.bx.psu.edu http://lists.bx.psu.edu/listinfo/galaxy-user

_______________________________________________ galaxy-user mailing list galaxy-user@lists.bx.psu.edu http://lists.bx.psu.edu/listinfo/galaxy-user