Hi, is there any Galaxy tool supporting the display of "sequence logos" (http://en.wikipedia.org/wiki/Sequence_logo) ? thanks, Erick _______________________________________________ galaxy-user mailing list galaxy-user(a)lists.bx.psu.edu http://lists.bx.psu.edu/listinfo/galaxy-user

I can recommend iceLogo too. Kind of sequence logos on steroids :). It's a pretty young project and I found some graphical glitches in the interface, but the developers respond very quickly :). They also offer iceLogo as a web service that you can call remotely... Cheers, Pi On Mar 23, 2010, at 8:07 PM, Mary Mangan wrote: > We know people like weblogo: http://weblogo.berkeley.edu/ > > And I recently started using Icelogo: > http://iomics.ugent.be/icelogoserver/main.html > > But there are others out there, I know. > > Mary > > -----Original Message----- > From: galaxy-user-bounces(a)lists.bx.psu.edu > [mailto:galaxy-user-bounces@lists.bx.psu.edu] On Behalf Of Anton Nekrutenko > Sent: Tuesday, March 23, 2010 2:31 PM > To: Erick Antezana > Cc: galaxy-user(a)bx.psu.edu > Subject: Re: [galaxy-user] Sequence logo > > Erick: > > Not at the moment. Do you have any in mind? > > a. > > > On Mar 23, 2010, at 6:33 AM, Erick Antezana wrote: > >> Hi, >> >> is there any Galaxy tool supporting the display of "sequence logos" >> (http://en.wikipedia.org/wiki/Sequence_logo) ? >> >> thanks, >> Erick >> _______________________________________________ >> galaxy-user mailing list >> galaxy-user(a)lists.bx.psu.edu >> http://lists.bx.psu.edu/listinfo/galaxy-user > > Anton Nekrutenko > http://nekrut.bx.psu.edu > http://usegalaxy.org > > > > _______________________________________________ > galaxy-user mailing list > galaxy-user(a)lists.bx.psu.edu > http://lists.bx.psu.edu/listinfo/galaxy-user > > _______________________________________________ > galaxy-user mailing list > galaxy-user(a)lists.bx.psu.edu > http://lists.bx.psu.edu/listinfo/galaxy-user ------------------------------------------------------------- mobile: +31 6 143 66 783 e-mail: pieter.neerincx(a)gmail.com skype:  pieter.online ------------------------------------------------------------- _______________________________________________ galaxy-user mailing list galaxy-user(a)lists.bx.psu.edu http://lists.bx.psu.edu/listinfo/galaxy-user

Hi, Just out of interest, is there a repository/Wiki page where all the XML conf files for apps can be submitted? A Weblogo interface is a good example of something that would benefit lots of people. I am sure there will be lots of others instances of third party apps developed outside the main Galaxy team in future (especially as Galaxy takes off!). Steve > > iceLogo looks indeed very promising; however, in terms of integration > to Galaxy, WebLogo (http://code.google.com/p/weblogo/) seems to be > much more straightforward? > > cheers, > Erick > > On 23 March 2010 23:59, Pieter Neerincx <pieter.neerincx(a)gmail.com&gt; wrote: >> >> I can recommend iceLogo too. Kind of sequence logos on steroids :). It's >> a pretty young project and I found some graphical glitches in the interface, >> but the developers respond very quickly :). They also offer iceLogo as a web >> service that you can call remotely... >> >> Cheers, >> >> Pi >> >> On Mar 23, 2010, at 8:07 PM, Mary Mangan wrote: >> >>> We know people like weblogo: http://weblogo.berkeley.edu/ >>> >>> And I recently started using Icelogo: >>> http://iomics.ugent.be/icelogoserver/main.html >>> >>> But there are others out there, I know. >>> >>> Mary >>> >>> -----Original Message----- >>> From: galaxy-user-bounces(a)lists.bx.psu.edu >>> [mailto:galaxy-user-bounces@lists.bx.psu.edu] On Behalf Of Anton >>> Nekrutenko >>> Sent: Tuesday, March 23, 2010 2:31 PM >>> To: Erick Antezana >>> Cc: galaxy-user(a)bx.psu.edu >>> Subject: Re: [galaxy-user] Sequence logo >>> >>> Erick: >>> >>> Not at the moment. Do you have any in mind? >>> >>> a. >>> >>> >>> On Mar 23, 2010, at 6:33 AM, Erick Antezana wrote: >>> >>>> Hi, >>>> >>>> is there any Galaxy tool supporting the display of "sequence logos" >>>> (http://en.wikipedia.org/wiki/Sequence_logo) ? >>>> >>>> thanks, >>>> Erick >>>> _______________________________________________ >>>> galaxy-user mailing list >>>> galaxy-user(a)lists.bx.psu.edu >>>> http://lists.bx.psu.edu/listinfo/galaxy-user >>> >>> Anton Nekrutenko >>> http://nekrut.bx.psu.edu >>> http://usegalaxy.org >>> >>> >>> >>> _______________________________________________ >>> galaxy-user mailing list >>> galaxy-user(a)lists.bx.psu.edu >>> http://lists.bx.psu.edu/listinfo/galaxy-user >>> >>> _______________________________________________ >>> galaxy-user mailing list >>> galaxy-user(a)lists.bx.psu.edu >>> http://lists.bx.psu.edu/listinfo/galaxy-user >> >> ------------------------------------------------------------- >> mobile: +31 6 143 66 783 >> e-mail: pieter.neerincx(a)gmail.com >> skype:  pieter.online >> ------------------------------------------------------------- >> >> >> _______________________________________________ >> galaxy-user mailing list >> galaxy-user(a)lists.bx.psu.edu >> http://lists.bx.psu.edu/listinfo/galaxy-user >> > > _______________________________________________ > galaxy-user mailing list > galaxy-user(a)lists.bx.psu.edu > http://lists.bx.psu.edu/listinfo/galaxy-user