CEAS/Transcription Factor Binding sites
Hi List, I am performing a chip seq experiment using CEAS in galaxy, i obtained the following output in pdf form: http://www.datafilehost.com/d/a9d75211 Could some one explain what the output from CEAS tells about the location of the binding sites for the dataset? Thanks in advance Benjy
Hi Benjy, Are you using the Cistrome public Galaxy instance? Maybe this is where the prior tool was also being used? http://cistrome.org/ This team has a google group, see this wiki page for more details: https://wiki.galaxyproject.org/PublicGalaxyServers#Cistrome_Analysis_Pipelin... Hope this helps! Jen Galaxy team On 12/16/13 6:58 AM, Benjamin Osei-agyeman wrote:
Hi List,
I am performing a chip seq experiment using CEAS in galaxy, i obtained the following output in pdf form:
http://www.datafilehost.com/d/a9d75211
Could some one explain what the output from CEAS tells about the location of the binding sites for the dataset?
Thanks in advance
Benjy
___________________________________________________________ The Galaxy User list should be used for the discussion of Galaxy analysis and other features on the public server at usegalaxy.org. Please keep all replies on the list by using "reply all" in your mail client. For discussion of local Galaxy instances and the Galaxy source code, please use the Galaxy Development list:
http://lists.bx.psu.edu/listinfo/galaxy-dev
To manage your subscriptions to this and other Galaxy lists, please use the interface at:
To search Galaxy mailing lists use the unified search at:
-- Jennifer Hillman-Jackson http://galaxyproject.org
participants (2)
-
Benjamin Osei-agyeman
-
Jennifer Jackson