Hi,
We have a SSO environment provided by Oracle Fusion products and for
some reason, they don't like to send over HTTP_REMOTE_USER as a header
variable to downstream servers. I have seen it before with other web
sites I have integrated with Oracle Access Manager. Is there a way
Galaxy can accept another HEADER variable than REMOTE_USER for its
external authentication?
As an extension:
* With just enabling HTTP_REMOTE_USER as a header variable from an
external authenticator, Galaxy works without any issues. I tried
this with a default Apache/mod_ldap/mod_authnz_ldap setup.
* However, when I mix the Oracle gateways into the mix, things break
down.
o I made OAM send HTTP_AUTH_USER over to Galaxy.
o I changed all instances of REMOTE_USER to AUTH_USER in the
installed location of Galaxy in my server.
o Authentication works fine, but I get issues with HISTORY part
of Galaxy (below), when I access a workflow or basically any
part of Galaxy that depends on HISTORY
Error Traceback:
View as: Interactive
<
https://galaxy.research.cchmc.org/dataset/list?sort=-update_time&f-na...
|
Text
<
https://galaxy.research.cchmc.org/dataset/list?sort=-update_time&f-na...
|
XML
<
https://galaxy.research.cchmc.org/dataset/list?sort=-update_time&f-na...
(full)
<
https://galaxy.research.cchmc.org/dataset/list?sort=-update_time&f-na...
? |AttributeError: 'NoneType' object has no attribute 'user'|
URL:
http://xxx.xxx.xxx/dataset/list?sort=-update_time&f-name=All&f-ta...
Module weberror.evalexception.middleware:*364* in |respond|
<
https://galaxy.research.cchmc.org/dataset/list?sort=-update_time&f-na...
view
<
https://galaxy.research.cchmc.org/dataset/list?sort=-update_time&f-na...
|>>
<
https://galaxy.research.cchmc.org/dataset/list?sort=-update_time&f-na...
*=* self*.*application*(*environ*,* detect_start_response*)*|
Module paste.recursive:*84* in |__call__|
<
https://galaxy.research.cchmc.org/dataset/list?sort=-update_time&f-na...
view
<
https://galaxy.research.cchmc.org/dataset/list?sort=-update_time&f-na...
|>>
<
https://galaxy.research.cchmc.org/dataset/list?sort=-update_time&f-na...
self*.*application*(*environ*,* start_response*)*|
Module galaxy.web.framework.middleware.remoteuser:*91* in |__call__|
<
https://galaxy.research.cchmc.org/dataset/list?sort=-update_time&f-na...
view
<
https://galaxy.research.cchmc.org/dataset/list?sort=-update_time&f-na...
|>>
<
https://galaxy.research.cchmc.org/dataset/list?sort=-update_time&f-na...
self*.*app*(* environ*,* start_response *)*|
Module paste.httpexceptions:*633* in |__call__|
<
https://galaxy.research.cchmc.org/dataset/list?sort=-update_time&f-na...
view
<
https://galaxy.research.cchmc.org/dataset/list?sort=-update_time&f-na...
|>>
<
https://galaxy.research.cchmc.org/dataset/list?sort=-update_time&f-na...
self*.*application*(*environ*,* start_response*)*|
Module galaxy.web.framework.base:*132* in |__call__|
<
https://galaxy.research.cchmc.org/dataset/list?sort=-update_time&f-na...
view
<
https://galaxy.research.cchmc.org/dataset/list?sort=-update_time&f-na...
|>>
<
https://galaxy.research.cchmc.org/dataset/list?sort=-update_time&f-na...
self*.*handle_request*(* environ*,* start_response *)*|
Module galaxy.web.framework.base:*190* in |handle_request|
<
https://galaxy.research.cchmc.org/dataset/list?sort=-update_time&f-na...
view
<
https://galaxy.research.cchmc.org/dataset/list?sort=-update_time&f-na...
|>>
<
https://galaxy.research.cchmc.org/dataset/list?sort=-update_time&f-na...
*=* method*(* trans*,* ****kwargs *)*|
Module galaxy.web.framework:*98* in |decorator|
<
https://galaxy.research.cchmc.org/dataset/list?sort=-update_time&f-na...
view
<
https://galaxy.research.cchmc.org/dataset/list?sort=-update_time&f-na...
|>>
<
https://galaxy.research.cchmc.org/dataset/list?sort=-update_time&f-na...
func*(* self*,* trans*,* ***args*,* ****kwargs *)*|
Module galaxy.webapps.galaxy.controllers.dataset:*555* in |list|
<
https://galaxy.research.cchmc.org/dataset/list?sort=-update_time&f-na...
view
<
https://galaxy.research.cchmc.org/dataset/list?sort=-update_time&f-na...
|>>
<
https://galaxy.research.cchmc.org/dataset/list?sort=-update_time&f-na...
message *=* self*.*_copy_datasets*(* trans*,* hda_ids*,*
target_histories *)*|
Module galaxy.webapps.galaxy.controllers.dataset:*1127* in
|_copy_datasets|
<
https://galaxy.research.cchmc.org/dataset/list?sort=-update_time&f-na...
view
<
https://galaxy.research.cchmc.org/dataset/list?sort=-update_time&f-na...
|>>
<
https://galaxy.research.cchmc.org/dataset/list?sort=-update_time&f-na...
user *!=* history*.*user*:*|
*AttributeError: 'NoneType' object has no attribute 'user'*
Thanks,
Prakash
___________________________________________________________
The Galaxy User list should be used for the discussion of
Galaxy analysis and other features on the public server
at
usegalaxy.org. Please keep all replies on the list by
using "reply all" in your mail client. For discussion of
local Galaxy instances and the Galaxy source code, please
use the Galaxy Development list:
http://lists.bx.psu.edu/listinfo/galaxy-dev
To manage your subscriptions to this and other Galaxy lists,
please use the interface at:
http://lists.bx.psu.edu/
To search Galaxy mailing lists use the unified search at:
http://galaxyproject.org/search/mailinglists/