Sorry folks, forgot the basics. It's a fresh install on Mac OS X 10.6.8 Started with sh run.sh in /Users/me/bio/galaxy Everything default. hg heads: changeset: 6298:b258de1e6cea tag: tip user: jeremy goecks <jeremy.goecks@emory.edu> date: Thu Nov 17 15:08:49 2011 -0500 summary: Pack js scripts. changeset: 6288:6483b3fbf1d6 branch: updates-for-tophat-1.3.1+ user: Jim Johnson <jj@umn.edu> date: Thu Nov 03 11:09:35 2011 -0500 summary: Tophat - fix typo in code. changeset: 6161:8d405036b501 branch: fastq-deinterlacer-memfix parent: 6160:70d41c4b591e parent: 6159:eafac82b3767 user: John Chilton <jmchilton@gmail.com> date: Mon Oct 24 15:36:24 2011 -0500 summary: Merging JJ fix with new branch Let me know if other config info is important -- Greg Edwards gedwards2@gmail.com