Hi, Can galaxy combine lots of data into a single file using "cat"? I have a 2GB sam type data, but I can't upload it by URL under my condition, so I want to spilt it into three files and upload it to galaxy and then combine it? Thanks a lot!weimin zhao
Text Manipulation <http://main.g2.bx.psu.edu/root/tool_menu#> -> Concatenate datasets <http://main.g2.bx.psu.edu/tool_runner?tool_id=cat1> tail-to-head is the equivalent of cat :) btw galaxy also accepts gzipped files so you can upload it faster that way Cheers Kevin On 18 November 2011 16:40, dongdong zhaoweiming < zhaoweiming1983@yahoo.com.cn> wrote:
Hi,
Can galaxy combine lots of data into a single file using "cat"? I have a 2GB sam type data, but I can't upload it by URL under my condition, so I want to spilt it into three files and upload it to galaxy and then combine it?
Thanks a lot! weimin zhao
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Hello Weimin, Instead of splitting up the file, using FTP with a desktop client would be a simpler solution. Please see: http://galaxyproject.org/wiki/Support#Trouble_loading_data If you do decide to split and merge anyway, Kevin pointed out the correct tool for the merge: "Concatenate datasets". Take care, Jen Galaxy team On 11/18/11 12:40 AM, dongdong zhaoweiming wrote:
Hi,
Can galaxy combine lots of data into a single file using "cat"? I have a 2GB sam type data, but I can't upload it by URL under my condition, so I want to spilt it into three files and upload it to galaxy and then combine it?
Thanks a lot! weimin zhao
___________________________________________________________ The Galaxy User list should be used for the discussion of Galaxy analysis and other features on the public server at usegalaxy.org. Please keep all replies on the list by using "reply all" in your mail client. For discussion of local Galaxy instances and the Galaxy source code, please use the Galaxy Development list:
http://lists.bx.psu.edu/listinfo/galaxy-dev
To manage your subscriptions to this and other Galaxy lists, please use the interface at:
-- Jennifer Jackson http://usegalaxy.org http://galaxyproject.org/wiki/Support
participants (3)
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dongdong zhaoweiming -
Jennifer Jackson -
Kevin L