If you are using the public Main Galaxy instance or a Cloud Galaxy AMI,
the genome should be available. But on a local instance, reference
genomes need to be set up. These are the instructions:
If you are on a local, you will probably want to start asking questions
about local set-up on the galaxy-dev(a)bx.psu.edu mailing list and also
consider subscribing/following it.
On 7/29/13 10:51 AM, Matthew Girgenti wrote:
Hi I'm currently using the Galaxy pipeline to analyze my illumina
chip-seq data. When I try to use "NGA: Mapping>Map with Bowtie for Illumina"
to map my reads there is no rat reference genome. I says I should contact galaxy.
Should I simply upload the genome to proceed with analysis?
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