Hi Colleagues, I mapped illumina sequences using Bowtie on Galaxy server, I could not locate the information, like how many there were total reads and in what percentage they are mapped with mouse genome etc (samples were from mouse). Help and suggestions are greatly acknowledged, Thank you for attention, Falak
Hello Falak, The tools in "Text Manipulation", "Filter and Sort", and "Join, Subtract and Group" are designed to help with this type of file analysis (basic stats). Please explore and let us know if you need help with any particular tool, Best, Jen Galaxy team On 4/18/11 7:47 AM, Sher, Falak wrote:
Hi Colleagues, I mapped illumina sequences using Bowtie on Galaxy server, I could not locate the information, like how many there were total reads and in what percentage they are mapped with mouse genome etc (samples were from mouse).
Help and suggestions are greatly acknowledged,
Thank you for attention,
Falak
___________________________________________________________ The Galaxy User list should be used for the discussion of Galaxy analysis and other features on the public server at usegalaxy.org. Please keep all replies on the list by using "reply all" in your mail client. For discussion of local Galaxy instances and the Galaxy source code, please use the Galaxy Development list:
http://lists.bx.psu.edu/listinfo/galaxy-dev
To manage your subscriptions to this and other Galaxy lists, please use the interface at:
-- Jennifer Jackson http://usegalaxy.org http://galaxyproject.org
Hello Falak, There may be another issue regarding metadata display we would like to confirm. Would you have time to share a link to your history? Options -> Share or Publish. You can send the link directly to me. Please note which dataset is the Bowtie result in question, if there are multiple in your history. Thanks! Jen Galaxy team On 4/18/11 11:04 AM, Jennifer Jackson wrote:
Hello Falak,
The tools in "Text Manipulation", "Filter and Sort", and "Join, Subtract and Group" are designed to help with this type of file analysis (basic stats). Please explore and let us know if you need help with any particular tool,
Best,
Jen Galaxy team
On 4/18/11 7:47 AM, Sher, Falak wrote:
Hi Colleagues, I mapped illumina sequences using Bowtie on Galaxy server, I could not locate the information, like how many there were total reads and in what percentage they are mapped with mouse genome etc (samples were from mouse).
Help and suggestions are greatly acknowledged,
Thank you for attention,
Falak
___________________________________________________________ The Galaxy User list should be used for the discussion of Galaxy analysis and other features on the public server at usegalaxy.org. Please keep all replies on the list by using "reply all" in your mail client. For discussion of local Galaxy instances and the Galaxy source code, please use the Galaxy Development list:
http://lists.bx.psu.edu/listinfo/galaxy-dev
To manage your subscriptions to this and other Galaxy lists, please use the interface at:
-- Jennifer Jackson http://usegalaxy.org http://galaxyproject.org
participants (2)
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Jennifer Jackson -
Sher, Falak