Hello Richard, Galaxy has tools that cover most steps, start to finish, for this type of analysis. These can be bundled into workflows for use on our main instance or your own (including for use with in-house clusters or external clouds). Which tools are the best fit will depend on the exact data type you are inputting and whether genomic regions, complete transcripts/genes, or SNPs are the final CNV targets. Start here for help that can get you oriented: http://main.g2.bx.psu.edu/u/james/p/exercises If/when you have a question about a tool or workflow, be sure to let us know and we can offer more specific help, Thanks! Jen Galaxy team On 12/16/10 9:29 AM, Richard Park wrote:

Hi Everyone,

I'm new to Galaxy and was just wondering if there are any modules for copy number analysis for NGS data?

Thanks, Richard Park

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