Same problem here.
I want to add a custom build, but it has been processing for more than 5 hours. Is it normal?
PS: my reference genome which I used to add the custom build is about 42Mb.
Thank you.
Mengmeng
----- Original Message ----- From: "Mengmeng Lu" mira0501@neo.tamu.edu To: "Lee Silver" lsilver@genepeeks.com Sent: Sunday, July 22, 2012 2:45:52 PM Subject: Re: [galaxy-user] "Jobs is waiting to run" all day on Main
Same problem here.
I want to add a custom build, but it has been processing for more than 5 hours. Is it normal?
PS: my reference genome which I used to add the custom build is about 42Mb.
Thank you.
Mengmeng
----- Original Message ----- From: "Lee Silver" lsilver@genepeeks.com To: galaxy-user@bx.psu.edu Cc: "Lee Silver" lsilver@genepeeks.com Sent: Saturday, July 21, 2012 5:20:19 PM Subject: [galaxy-user] "Jobs is waiting to run" all day on Main
Since earlier today (at least 6 hours), all of my jobs have been stuck in the "waiting to run" state on the Main Galaxy server.
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Hello Mengmeng,
Please try your upload process again and let us know if you continue to have problems.
Thank you!
Jen Galaxy team
On 7/22/12 12:46 PM, Lu, Mengmeng wrote:
Same problem here.
I want to add a custom build, but it has been processing for more than 5 hours. Is it normal?
PS: my reference genome which I used to add the custom build is about 42Mb.
Thank you.
Mengmeng
Hi Galaxy team,
I tried to "add a custom build" again yesterday. Till now, it has been in the status of "processing" for almost one day.
PS: I am using the public server.
So is there anything wrong with my "new build"?
Thanks.
Mengmeng
----- Original Message ----- From: "Jennifer Jackson" jen@bx.psu.edu To: "Mengmeng Lu" mira0501@neo.tamu.edu Cc: galaxy-user@bx.psu.edu Sent: Monday, July 23, 2012 1:48:35 PM Subject: Re: [galaxy-user] "Jobs is waiting to run" all day on Main
Hello Mengmeng,
Please try your upload process again and let us know if you continue to have problems.
Thank you!
Jen Galaxy team
On 7/22/12 12:46 PM, Lu, Mengmeng wrote:
Same problem here.
I want to add a custom build, but it has been processing for more than 5 hours. Is it normal?
PS: my reference genome which I used to add the custom build is about 42Mb.
Thank you.
Mengmeng
Hello Mengmeng,
I apologize for misunderstanding your original question. The problem is loading a dataset already in the history into the "Custom Builds" group. Either through the "User -> Custom Builds" or "Visualization -> Add Custom Build" link.
First, double check your fasta dataset against the custom genome criteria: http://wiki.g2.bx.psu.edu/Support#Custom_reference_genome http://wiki.g2.bx.psu.edu/Learn/CustomGenomes
Correct if necessary (troubleshooting help is also on wiki) and restart. If you are using one of the len file options, double check format against the file descriptions on the Custom Builds form itself.
If you are still stuck, please share a copy of your history. Do this directly using "Options -> Share or Publish", add me as a share user "jen@bx.psu.edu", and email back when ready.
Thanks,
Jen Galaxy team
On 7/24/12 7:55 AM, Lu, Mengmeng wrote:
Hi Galaxy team,
I tried to "add a custom build" again yesterday. Till now, it has been in the status of "processing" for almost one day.
PS: I am using the public server.
So is there anything wrong with my "new build"?
Thanks.
Mengmeng
----- Original Message ----- From: "Jennifer Jackson"jen@bx.psu.edu To: "Mengmeng Lu"mira0501@neo.tamu.edu Cc: galaxy-user@bx.psu.edu Sent: Monday, July 23, 2012 1:48:35 PM Subject: Re: [galaxy-user] "Jobs is waiting to run" all day on Main
Hello Mengmeng,
Please try your upload process again and let us know if you continue to have problems.
Thank you!
Jen Galaxy team
On 7/22/12 12:46 PM, Lu, Mengmeng wrote:
Same problem here.
I want to add a custom build, but it has been processing for more than 5 hours. Is it normal?
PS: my reference genome which I used to add the custom build is about 42Mb.
Thank you.
Mengmeng
Thanks Jen.
Yes, there is a format problem in my sequence file. The identifier was like "aaa.abc.contig1". After I deleted the first same letters to "contig1", then it could be added to custom build.
Mengmeng
----- Original Message ----- From: "Jennifer Jackson" jen@bx.psu.edu To: "Mengmeng Lu" mira0501@neo.tamu.edu Cc: galaxy-user@bx.psu.edu Sent: Tuesday, July 24, 2012 2:14:56 PM Subject: Re: [galaxy-user] "Jobs is waiting to run" all day on Main
Hello Mengmeng,
I apologize for misunderstanding your original question. The problem is loading a dataset already in the history into the "Custom Builds" group. Either through the "User -> Custom Builds" or "Visualization -> Add Custom Build" link.
First, double check your fasta dataset against the custom genome criteria: http://wiki.g2.bx.psu.edu/Support#Custom_reference_genome http://wiki.g2.bx.psu.edu/Learn/CustomGenomes
Correct if necessary (troubleshooting help is also on wiki) and restart. If you are using one of the len file options, double check format against the file descriptions on the Custom Builds form itself.
If you are still stuck, please share a copy of your history. Do this directly using "Options -> Share or Publish", add me as a share user "jen@bx.psu.edu", and email back when ready.
Thanks,
Jen Galaxy team
On 7/24/12 7:55 AM, Lu, Mengmeng wrote:
Hi Galaxy team,
I tried to "add a custom build" again yesterday. Till now, it has been in the status of "processing" for almost one day.
PS: I am using the public server.
So is there anything wrong with my "new build"?
Thanks.
Mengmeng
----- Original Message ----- From: "Jennifer Jackson"jen@bx.psu.edu To: "Mengmeng Lu"mira0501@neo.tamu.edu Cc: galaxy-user@bx.psu.edu Sent: Monday, July 23, 2012 1:48:35 PM Subject: Re: [galaxy-user] "Jobs is waiting to run" all day on Main
Hello Mengmeng,
Please try your upload process again and let us know if you continue to have problems.
Thank you!
Jen Galaxy team
On 7/22/12 12:46 PM, Lu, Mengmeng wrote:
Same problem here.
I want to add a custom build, but it has been processing for more than 5 hours. Is it normal?
PS: my reference genome which I used to add the custom build is about 42Mb.
Thank you.
Mengmeng
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