Hello, While this is not available on the main public Galaxy instance (and there are no immediate plans for that to change), a wrapper tool is in the Tool Shed for use with local/cloud instances (both choices have a web interface that you would own). http://toolshed.g2.bx.psu.edu/repos/juanperin/bwa_wrapper/rev/fb4844b6a98e To get started, please see: http://getgalaxy.org http://wiki.g2.bx.psu.edu/Admin/Cloud http://wiki.g2.bx.psu.edu/Tool%20Shed Hopefully this helps, Best, Jen Galaxy team On 4/16/12 11:14 AM, shamsher jagat wrote:

I am doing alignments of 454 reads in bwa and was wondering if there is an option to change it to bwasw and use Galaxy web version? Thanks

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