Hello all,
First of all I would like to thank you guys for developing and mainting this so useful tool as Galaxy!
I have our own installation fo Galaxy (galaxy-dist version) with ncbi-blast-plus. Calling blastn results to the following error message:
An error occurred running this job:*Traceback (most recent call last): File "/home/galaxy/galaxy-dist/tools/ncbi_blast_plus/hide_stderr.py", line 29, in <module> sys.stderr.write("Error invoking command:\n%s\n\n%s\n" % (cmd, err)) NameError: name 'cmd' is not defined* * * Could you please explain, what this error can mean? The link to the shared history is* * http://dmbcserv.dyndns.org:8080/u/hogart/h/test-of-blast* * * * Thank you in advance!
Hi Sergei,
This is a bug in the script, I will ask Peter, the author, to look into it. Thanks!
K
On Thu, Jun 30, 2011 at 12:44 PM, Sergei Ryazansky s.ryazansky@gmail.comwrote:
Hello all,
First of all I would like to thank you guys for developing and mainting this so useful tool as Galaxy!
I have our own installation fo Galaxy (galaxy-dist version) with ncbi-blast-plus. Calling blastn results to the following error message:
An error occurred running this job:*Traceback (most recent call last): File "/home/galaxy/galaxy-dist/tools/ncbi_blast_plus/hide_stderr.py", line 29, in <module> sys.stderr.write("Error invoking command:\n%s\n\n%s\n" % (cmd, err)) NameError: name 'cmd' is not defined*
Could you please explain, what this error can mean? The link to the shared history is* * http://dmbcserv.dyndns.org:8080/u/hogart/h/test-of-blast* *
Thank you in advance!
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Thanks for answer, but I have just updated the galaxy source code and blastn works fine! Sorry for any inconvenience :)
30.06.2011 22:53, Kanwei Li пишет:
Hi Sergei,
This is a bug in the script, I will ask Peter, the author, to look into it. Thanks!
K
On Thu, Jun 30, 2011 at 12:44 PM, Sergei Ryazansky <s.ryazansky@gmail.com mailto:s.ryazansky@gmail.com> wrote:
Hello all, First of all I would like to thank you guys for developing and mainting this so useful tool as Galaxy! I have our own installation fo Galaxy (galaxy-dist version) with ncbi-blast-plus. Calling blastn results to the following error message: An error occurred running this job:/Traceback (most recent call last): File "/home/galaxy/galaxy-dist/tools/ncbi_blast_plus/hide_stderr.py", line 29, in <module> sys.stderr.write("Error invoking command:\n%s\n\n%s\n" % (cmd, err)) NameError: name 'cmd' is not defined/ / / Could you please explain, what this error can mean? The link to the shared history is//http://dmbcserv.dyndns.org:8080/u/hogart/h/test-of-blast// / / Thank you in advance!
On Fri, Jul 1, 2011 at 4:35 PM, Sergei Ryazansky s.ryazansky@gmail.com wrote:
Thanks for answer, but I have just updated the galaxy source code and blastn works fine! Sorry for any inconvenience :)
It was an error in the wrapper script's error handler, already fixed.
Peter
galaxy-user@lists.galaxyproject.org
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Kanwei Li -
Peter Cock -
Sergei Ryazansky