Hello!! Does anybody know whether Ion Torrent data is supported by Galaxy? Thank you!! Dra. Alicia Barroso del Jesus Unidad de Genómica IPBLN Instituto de Parasitología y Biomedicina "López-Neyra". CSIC Parque Tecnológico de Ciencias de la Salud Avda. del Conocimiento s/n - 18100 Armilla, Granada . España ************************************************* secuenciacion@ipb.csic.es Tel.: 958 181 635 **************************************************
2011/9/28 cuentasecuenciacion <secuenciacion@ipb.csic.es>:
Hello!!
Does anybody know whether Ion Torrent data is supported by Galaxy?
Thank you!!
IonTorrent data acts a lot like Roche 454, it even comes as SFF files (or FASTQ). So in principle anything Galaxy supports for 454 would be worth trying with IonTorrent data. Peter
Also, test instance (http://test.g2.bx.psu.edu) has TMap mapper, which was recently rolled out for testing. The wrapper was contributed by Nils Homer. At this time there are only E. coli indices, but more can be added. a. Anton Nekrutenko http://galaxyproject.org On Sep 28, 2011, at 10:18 AM, Peter Cock wrote:
2011/9/28 cuentasecuenciacion <secuenciacion@ipb.csic.es>:
Hello!!
Does anybody know whether Ion Torrent data is supported by Galaxy?
Thank you!!
IonTorrent data acts a lot like Roche 454, it even comes as SFF files (or FASTQ). So in principle anything Galaxy supports for 454 would be worth trying with IonTorrent data.
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participants (3)
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Anton Nekrutenko -
cuentasecuenciacion -
Peter Cock