Hello Jean-Baptiste,
Thanks very much for bringing these issues to our attention.
In change set 4860:d7162c6046fb, we've added exception handling around displaying a
data library so an error message is displayed rather than the server error. We have also
added the ability for an admin user to delete / undelete data libraries when browsing all
data libraries ( these operations can be performed on 1 or more data libraries
simultaneously ).
This change set should make it to the distribution within the next few weeks, or you can
pull directly from our development repo at
https://bitbucket.org/galaxy/galaxy-central/
Greg Von Kuster
On Dec 30, 2010, at 12:28 PM, Jean-Baptiste Denis wrote:
Hello everybody,
i'm a sysadmin in charge of installing a Galaxy server. I'm a totally
beginner regarding this software.
I've installed Galaxy using the documentation on the wiki (with Apache
as a proxy and postgresql as database) and everything went fine.
I've tried to create a new library as a galaxy admin. I've added a
dataset using "Upload files from filesystem paths" without copying
data into galaxy. To test the behaviour of Galaxy in a weird situation
i've added "/" (:D), clicked on "Upload to library" and closed
the
navigation tab after one minute.
As a result, the new data library appears under the "Manage data
libraries" page. But, when i click on it, i've got a server error.
Here is the traceback :
--------------------------
....
File
'/home/galaxy/galaxy-dist/database/compiled_templates/library/common/browse_library.mako.py',
line 229 in render_render_content
if not trans.app.security_agent.library_is_public( library,
contents=True ):
File '/home/sis/jbdenis/galaxy-dist/lib/galaxy/security/__init__.py',
line 541 in library_is_public
File '/home/sis/jbdenis/galaxy-dist/lib/galaxy/security/__init__.py',
line 559 in folder_is_public
File '/home/sis/jbdenis/galaxy-dist/lib/galaxy/security/__init__.py',
line 559 in folder_is_public
File '/home/sis/jbdenis/galaxy-dist/lib/galaxy/security/__init__.py',
line 559 in folder_is_public
File '/home/sis/jbdenis/galaxy-dist/lib/galaxy/security/__init__.py',
line 562 in folder_is_public
AttributeError: 'NoneType' object has no attribute 'dataset'
--------------------------
My question is : how can i delete this library without messing with the
database consistency?
Any hints ?
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Greg Von Kuster
Galaxy Development Team
greg(a)bx.psu.edu