I have the same problem with the BWA mapping tool (jobs waiting for run since Friday), but other tools (e.g. SAMtools) are working. My analysis also depends a lot on these mapping data!
Debora
Message: 1 Date: Sat, 28 Sep 2013 16:47:01 +0000 From: "Yardley, Nathan" ny2217@cumc.columbia.edu To: "galaxy-user@lists.bx.psu.edu" galaxy-user@lists.bx.psu.edu Subject: Re: [galaxy-user] main galaxy server is down? Message-ID: 9633FF819ABAF94A82A38D94B64B664501291F43@SGWAEXM003.mc.cumc.columbia.edu
Content-Type: text/plain; charset="us-ascii"
I'm wondering the same. I have a mapping job that hasn't moved into the queue since I put it there on Thursday. It's the last sample set I need to move forward with some analysis and I've been trying to get it for more than a week now. :/
Nathan ________________________________________ From: galaxy-user-bounces@lists.bx.psu.edu [galaxy-user-bounces@lists.bx.psu.edu] on behalf of Boaz Shaanan [bshaanan@bgu.ac.il] Sent: Friday, September 27, 2013 5:37 PM To: galaxy-user@lists.bx.psu.edu Subject: [galaxy-user] main galaxy server is down?
Hi,
Is the main galaxy server down? Or very sloooow? I have a Lastz job (not too demanding and one that has been run several times before) waiting for a long time already.
Thanks,
Boaz
Boaz Shaanan, Ph.D. Dept. of Life Sciences Ben-Gurion University of the Negev Beer-Sheva 84105 Israel
E-mail: bshaanan@bgu.ac.il Phone: 972-8-647-2220 Skype: boaz.shaanan Fax: 972-8-647-2992 or 972-8-646-1710
The Galaxy User list should be used for the discussion of Galaxy analysis and other features on the public server at usegalaxy.org. Please keep all replies on the list by using "reply all" in your mail client. For discussion of local Galaxy instances and the Galaxy source code, please use the Galaxy Development list:
http://lists.bx.psu.edu/listinfo/galaxy-dev
To manage your subscriptions to this and other Galaxy lists, please use the interface at:
To search Galaxy mailing lists use the unified search at:
Hello Debora,
As I just replied to the other similar post, performance should be improved by now on the main public Galaxy. Please allow your jobs to run if still queued and if any error due to fileserver or cluster issues, please simply re-run.
Our apologies for these inconveniences, improvements are truly due very soon!
Best,
Jen Galaxy team
On 9/30/13 3:08 AM, garzetti wrote:
I have the same problem with the BWA mapping tool (jobs waiting for run since Friday), but other tools (e.g. SAMtools) are working. My analysis also depends a lot on these mapping data!
Debora
galaxy-user@lists.galaxyproject.org