Sorry, I did not read carefully. All three samples are listed, just down in the column I found the other sample. ib On Sat, Aug 11, 2012 at 7:41 PM, i b <ibseq12@gmail.com> wrote:

Dear all, I ran Cuffdiff with 3 groups: A, B, C each with 2, 5 and 1 replicates respectively. When looking at the transcripts dif.exp.testing, I have only sample A and B and redpective values. What happened to sample C?

Thanks for any help. ib