Hello Shamsher, The tool group "NGS: Peak Calling" will be of interest. Each tool has some basic documentation plus links out to associated publications and tool author documentation resources. And a tutorial covering ChIP-seq analysis using MACS is in our "Shared Data -> Published Pages -> Galaxy Exercises" page: http://usegalaxy.org/u/james/p/exercise-chip-seq Best wishes for your project, Jen Galaxy team On 11/11/11 10:23 AM, shamsher jagat wrote:

Do we have option of running MA2C peaks in Galaxy or is tehre an option of analyzing Chip on Chip data from Nimbelgen. Thanks

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