1. How do I transfer files using the URL? As a test I wanted to transfer a file to my local installation of Galaxy so I put in the location of the file on my Linux box. file:///home/bmladmin/demo_data-old/file.nii.gz<file:///\\home\bmladmin\demo_data-old\file.nii.gz> into the "Get Data" URL box. But it seems to think that this is code that I've pasted rather than a link to the file. Will it only work if it is proceeded by http? 2. Also, when uploading a file using "Get Data" it seems the file is renamed to dataset_'id'.dat in ~/database/files/000/. Is it possible for the file to keep its name rather than being renamed? Neil
When uploading a file using “Get Data” it seems the file is renamed to dataset_’id’.dat in ~/database/files/000/. Is it possible for the file to keep its name rather than being renamed? It seems this is being done because of the line ${output.dataset.dataset.id}:${output.files_path}:${file_name} in the upload.xml file. But I don't know where in the code it gets ${file_name} from. Any ideas how i change this to get the correct name of the file being uploaded? Neil
Hi Neil, You're looking for the option to "link to" data, which is explained here: http://wiki.g2.bx.psu.edu/Admin/Data%20Libraries/Uploading%20Library%20Files --nate On Aug 22, 2012, at 12:44 AM, <Neil.Burdett@csiro.au> wrote:
When uploading a file using “Get Data” it seems the file is renamed to dataset_’id’.dat in ~/database/files/000/. Is it possible for the file to keep its name rather than being renamed?
It seems this is being done because of the line
${output.dataset.dataset.id}:${output.files_path}:${file_name}
in the upload.xml file. But I don't know where in the code it gets ${file_name} from. Any ideas how i change this to get the correct name of the file being uploaded?
Neil
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Nate Coraor -
Neil.Burdett＠csiro.au