after 'trim sequences', 'map w/Bowtie' job has been waiting for hours
Greetings, I am using Galaxy Main On 8/1/2013, and after 'trimming sequences' on my 'FASTQ groomed' data, I attempted to align my (single-end) 'trimmed sequences' output data to 'hg19 Canonical male' with 'Map with Bowtie for Illumina' It is now 8/2/2013, and the 'Map with Bowtie for Illumina' job has been 'waiting to run' all night, over night. I have 're-newed' the history several times, but have not deleted or re-run the job for fear of losing my place in the queue. Can you tell me if the delay is because I've done something incorrectly? https://main.g2.bx.psu.edu/u/theresa-stueve/h/1stunsupctcfupload -- (Theresa) Ryan Stueve Department of Preventive Medicine USC
Hello, The public Main Galaxy has been very slow recently, but you should being seeing performance improvement by now. Allow jobs to run for the best results. http://wiki.galaxyproject.org/Support#Dataset_status_and_how_jobs_execute Our apologies for the inconvenience, Jen Galaxy team On 8/2/13 6:34 AM, Theresa Stueve wrote:
Greetings, I am using Galaxy Main On 8/1/2013, and after 'trimming sequences' on my 'FASTQ groomed' data, I attempted to align my (single-end) 'trimmed sequences' output data to 'hg19 Canonical male' with 'Map with Bowtie for Illumina'
It is now 8/2/2013, and the 'Map with Bowtie for Illumina' job has been 'waiting to run' all night, over night. I have 're-newed' the history several times, but have not deleted or re-run the job for fear of losing my place in the queue. Can you tell me if the delay is because I've done something incorrectly? https://main.g2.bx.psu.edu/u/theresa-stueve/h/1stunsupctcfupload
-- (Theresa) Ryan Stueve Department of Preventive Medicine USC
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participants (2)
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Jennifer Jackson
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Theresa Stueve