Hi Dear Is there anybody whom I can share my data with? I have an important question that I tried to answer, but I could not. Please see the attachment first, and let us see the first read in the first row. I need to know how many times I have this read in the whole data. Do I have to count all reads manually to know the number of this read? It would take a long time to count 11 million reads. Thank you
Hello Tarek, If you want to reduce the number of identical reads, then please see the tool "FASTA manipulation -> Collapse sequences". Converting formats would be necessary, the tool "Tabular-to-FASTA" can perform this operation. Best, Jen Galaxy team On 8/2/11 3:57 PM, tarek addwebi wrote: On 8/2/11 3:57 PM, tarek addwebi wrote:
Hi Dear
Is there anybody whom I can share my data with? I have an important question that I tried to answer, but I could not. Please see the attachment first, and let us see the first read in the first row. I need to know how many times I have this read in the whole data. Do I have to count all reads manually to know the number of this read? It would take a long time to count 11 million reads. Thank you
___________________________________________________________ The Galaxy User list should be used for the discussion of Galaxy analysis and other features on the public server at usegalaxy.org. Please keep all replies on the list by using "reply all" in your mail client. For discussion of local Galaxy instances and the Galaxy source code, please use the Galaxy Development list:
http://lists.bx.psu.edu/listinfo/galaxy-dev
To manage your subscriptions to this and other Galaxy lists, please use the interface at:
-- Jennifer Jackson http://usegalaxy.org http://galaxyproject.org/Support
Hi Dear
Is there anybody whom I can share my data with? I have an important question that I tried to answer, but I could not. Please see the attachment first, and let us see the first read in the first row. I need to know how many times I have this read in the whole data. Do I have to count all reads manually to know the number of this read? It would take a long time to count 11 million reads. Thank you
___________________________________________________________ The Galaxy User list should be used for the discussion of Galaxy analysis and other features on the public server at usegalaxy.org. Please keep all replies on the list by using "reply all" in your mail client. For discussion of local Galaxy instances and the Galaxy source code, please use the Galaxy Development list:
http://lists.bx.psu.edu/listinfo/galaxy-dev
To manage your subscriptions to this and other Galaxy lists, please use the interface at:
-- Jennifer Jackson http://usegalaxy.org http://galaxyproject.org/Support
participants (2)
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Jennifer Jackson -
tarek addwebi