Unable to visualize the Tophat accepted hits by Trackster tool
Hello, My name is Pinkuan, and I have been analyzing some RNA-seq data these days, but I confronted a problem when I did the visualization of the Tophat recepted hits with the Trackster tool. When I add the data of Tophat recepted hits to the visualization tool, there turns out to be an error that I can not visualize the data. So, do you have any idea about how to solve this problem? Greatly thanks, Pinkuan
Hi Pinkua, Could you please provide more details about the error? Share the visualization & history with the problem? You can send directly to me to keep your data private, or send back with a cc to galaxy-bugs@bx.psu.edu instead (internal list): http://wiki.galaxyproject.org/Support#Shared_and_Published_data Thanks! Jen Galaxy team On 9/12/13 11:47 AM, Zhu Pinkuan wrote:
Hello, My name is Pinkuan, and I have been analyzing some RNA-seq data these days, but I confronted a problem when I did the visualization of the Tophat recepted hits with the Trackster tool. When I add the data of Tophat recepted hits to the visualization tool, there turns out to be an error that I can not visualize the data. So, do you have any idea about how to solve this problem? Greatly thanks, Pinkuan
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Hello Pinkuan, Do you mean that the BAM file does not load into a Trackster Visualization session? This can sometime take time to fully load, depending on the size of the data. You can start the load, save the visualization, then come back later if you do not want to wait. Please try again this morning, as sometimes load on the public Main Galaxy server can be a factor in high-compute tool performance, and let us know if you continue to have problems. Best, Jen Galaxy team On 9/12/13 11:47 AM, Zhu Pinkuan wrote:
Hello, My name is Pinkuan, and I have been analyzing some RNA-seq data these days, but I confronted a problem when I did the visualization of the Tophat recepted hits with the Trackster tool. When I add the data of Tophat recepted hits to the visualization tool, there turns out to be an error that I can not visualize the data. So, do you have any idea about how to solve this problem? Greatly thanks, Pinkuan
___________________________________________________________ The Galaxy User list should be used for the discussion of Galaxy analysis and other features on the public server at usegalaxy.org. Please keep all replies on the list by using "reply all" in your mail client. For discussion of local Galaxy instances and the Galaxy source code, please use the Galaxy Development list:
http://lists.bx.psu.edu/listinfo/galaxy-dev
To manage your subscriptions to this and other Galaxy lists, please use the interface at:
To search Galaxy mailing lists use the unified search at:
-- Jennifer Hillman-Jackson http://galaxyproject.org
participants (2)
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Jennifer Jackson -
Zhu Pinkuan