Hi, I tried to lift over a list of chromosome mapped to WS180 (ce5) to ce6, but it seems that galaxy does not support ce5. Could you please help? Thank you very much! Best regards, Julie
Julie, This conversion combination (ce5 --> ce6) does currently exist in Galaxy. ce6 is actually the only listed output option for ce5 files. Have you set your original file to database ce5? As soon as you have a database selected, when you open the lift-over tool and select that file, all of the valid options for that database will be automatically listed in the dropdown box. What is happening so that it does not work for you? Regards, Kelly On Nov 29, 2010, at 10:45 AM, Zhu, Lihua (Julie) wrote:
Hi,
I tried to lift over a list of chromosome mapped to WS180 (ce5) to ce6, but it seems that galaxy does not support ce5.
Could you please help? Thank you very much!
Best regards,
Julie
_______________________________________________ galaxy-user mailing list galaxy-user@lists.bx.psu.edu http://lists.bx.psu.edu/listinfo/galaxy-user
Kelly, Thank you very much! It worked this time. FYI, I had problem previously due to the presence of quote around the chromosome column. Best regards, Julie On 11/30/10 9:20 AM, "Kelly Vincent" <kpvincent@bx.psu.edu> wrote:
Julie,
This conversion combination (ce5 --> ce6) does currently exist in Galaxy. ce6 is actually the only listed output option for ce5 files. Have you set your original file to database ce5? As soon as you have a database selected, when you open the lift-over tool and select that file, all of the valid options for that database will be automatically listed in the dropdown box. What is happening so that it does not work for you?
Regards, Kelly
On Nov 29, 2010, at 10:45 AM, Zhu, Lihua (Julie) wrote:
Hi,
I tried to lift over a list of chromosome mapped to WS180 (ce5) to ce6, but it seems that galaxy does not support ce5.
Could you please help? Thank you very much!
Best regards,
Julie
_______________________________________________ galaxy-user mailing list galaxy-user@lists.bx.psu.edu http://lists.bx.psu.edu/listinfo/galaxy-user
participants (2)
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Kelly Vincent
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Zhu, Lihua (Julie)