3:45 p.m.
Hi,
I tried to lift over a list of chromosome mapped to WS180 (ce5) to ce6, but
it seems that galaxy does not support ce5.
Could you please help? Thank you very much!
Best regards,
Julie
2:20 p.m.
Julie,
This conversion combination (ce5 --> ce6) does currently exist in
Galaxy. ce6 is actually the only listed output option for ce5 files.
Have you set your original file to database ce5? As soon as you have a
database selected, when you open the lift-over tool and select that
file, all of the valid options for that database will be automatically
listed in the dropdown box. What is happening so that it does not work
for you?
Regards,
Kelly
On Nov 29, 2010, at 10:45 AM, Zhu, Lihua (Julie) wrote:
Hi,
I tried to lift over a list of chromosome mapped to WS180 (ce5) to
ce6, but
it seems that galaxy does not support ce5.
Could you please help? Thank you very much!
Best regards,
Julie
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2:34 p.m.
Kelly,
Thank you very much! It worked this time. FYI, I had problem previously due
to the presence of quote around the chromosome column.
Best regards,
Julie
On 11/30/10 9:20 AM, "Kelly Vincent" <kpvincent(a)bx.psu.edu> wrote:
Julie,
This conversion combination (ce5 --> ce6) does currently exist in
Galaxy. ce6 is actually the only listed output option for ce5 files.
Have you set your original file to database ce5? As soon as you have a
database selected, when you open the lift-over tool and select that
file, all of the valid options for that database will be automatically
listed in the dropdown box. What is happening so that it does not work
for you?
Regards,
Kelly
On Nov 29, 2010, at 10:45 AM, Zhu, Lihua (Julie) wrote:
> Hi,
>
> I tried to lift over a list of chromosome mapped to WS180 (ce5) to
> ce6, but
> it seems that galaxy does not support ce5.
>
> Could you please help? Thank you very much!
>
> Best regards,
>
> Julie
>
>
>
> _______________________________________________
> galaxy-user mailing list
> galaxy-user(a)lists.bx.psu.edu
> http://lists.bx.psu.edu/listinfo/galaxy-user
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Zhu, Lihua (Julie)