Hi Claudio,

did you installed Augustus with the ToolShed? The env variable $AUGUSTUS_SCRIPT_PATH need to be set and point to the augustus wrapper folder containing the extract_features.py script.

Hope that helps! Bjoern

Hello,

I am trying to use the genome Annotation tool Augustus on my locally installed copy of Galaxy. After loading the data file, all analyses stop and deliver the following:

error an error occurred with this dataset: /bin/sh:1:augustus: not found python: can't open file: '/extract_features.py': [Errno 2] No such file or directory

Python is installed on my system (Ubuntu 12.04, Python 2.7.3)

It must be something very basic I'm missing, but more basic are my linux skills…

Thanks a lot

Claudio

~^~^~^~^~^~^~^~^~^~^~^~^~^~^~^~^~^~^~^ Claudio Slamovits, Canadian Institute for Advanced Research Department of Biochemistry and Molecular Biology Dalhousie University 5850 College Street, Halifax, Nova Scotia B3H 4R2, Canada

Lab Webpage: http://slamo.biochem.dal.ca Lab: (902) 494 7894 Office: (902) 494 8825 Fax: (902) 494 1355 ^~^~^~^~^~^~^~^~^~^~^~^~^~^~^~^~^~^~^~

"Reality is what it is, not what you want it to be."

• Frank Zappa

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