Hi- the chip-chip data is in wiggle format and galaxy sends this message error, format: wig, database: hg17 Info: ------------------------------------------------------------------------ --- Reached output limit of 100000 data values, please make region smaller, or set a higher output line limit with the filter settings. ------------------------------------------------------------------------ --- A search for only chr 7 produces the same error as the whole genome search. Is there any way to do a minimum of one chromosome at a time? Thanks very much, Laura Laura Elnitski, Ph.D. Head Genomic Functional Analysis Section Genome Technology Branch National Human Genome Research Institute National Institutes of Health 5625 Fishers Lane, Rm. 5N-01R Rockville, MD 20852 phone: 301-451-0265 fax: 301-435-6170
Laura, That message is actually from the table browser. If you select "filter" on the table browser output page you can increase this limit to 10,000,000 rows (wiggle format has one line per data point, so any given chromosome or even encode region will likely have more than 100,000 lines). -- jt On Mar 30, 2006, at 5:57 PM, Laura Elnitski wrote:
Hi-
the chip-chip data is in wiggle format and galaxy sends this message error, format: wig, database: hg17 Info: ----------------------------------------------------------------------- ---- Reached output limit of 100000 data values, please make region smaller, or set a higher output line limit with the filter settings. ----------------------------------------------------------------------- ----
A search for only chr 7 produces the same error as the whole genome search. Is there any way to do a minimum of one chromosome at a time?
Thanks very much, Laura
Laura Elnitski, Ph.D. Head Genomic Functional Analysis Section Genome Technology Branch National Human Genome Research Institute National Institutes of Health 5625 Fishers Lane, Rm. 5N-01R Rockville, MD 20852 phone: 301-451-0265 fax: 301-435-6170
_______________________________________________ Galaxy-user mailing list Galaxy-user@bx.psu.edu http://mail.bx.psu.edu/cgi-bin/mailman/listinfo/galaxy-user
Oh- of course--- I was thinking the message was from Galaxy and the use of the filter option in that context wasn't clear to me. Thanks very much! Laura On Mar 30, 2006, at 6:22 PM, James Taylor wrote:
Laura,
That message is actually from the table browser. If you select "filter" on the table browser output page you can increase this limit to 10,000,000 rows (wiggle format has one line per data point, so any given chromosome or even encode region will likely have more than 100,000 lines).
-- jt
On Mar 30, 2006, at 5:57 PM, Laura Elnitski wrote:
Hi-
the chip-chip data is in wiggle format and galaxy sends this message error, format: wig, database: hg17 Info:
---------------------------------------------------------------------- -
---- Reached output limit of 100000 data values, please make region smaller, or set a higher output line limit with the filter settings.
---------------------------------------------------------------------- -
----
A search for only chr 7 produces the same error as the whole genome search. Is there any way to do a minimum of one chromosome at a time?
Thanks very much, Laura
Laura Elnitski, Ph.D. Head Genomic Functional Analysis Section Genome Technology Branch National Human Genome Research Institute National Institutes of Health 5625 Fishers Lane, Rm. 5N-01R Rockville, MD 20852 phone: 301-451-0265 fax: 301-435-6170
_______________________________________________ Galaxy-user mailing list Galaxy-user@bx.psu.edu http://mail.bx.psu.edu/cgi-bin/mailman/listinfo/galaxy-user
Laura Elnitski, Ph.D. Head Genomic Functional Analysis Section Genome Technology Branch National Human Genome Research Institute National Institutes of Health 5625 Fishers Lane, Rm. 5N-01R Rockville, MD 20852 phone: 301-451-0265 fax: 301-435-6170
participants (2)
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James Taylor -
Laura Elnitski