I am new to Galaxy and am using it for analysis of BLAST results and phylogeny. I have uploaded a file with contig names, the BLAST GI number, and the total read count for each contig. When I use Galaxy to 'Summarize taxonomy' and 'Draw phylogeny', I have lost the total read counts. Eg. In the results of these it tells me how many contigs belong to Fungi or Metazoa, whereas each contig actually has a different number of reads. Is there any way to reflect this in Galaxy? I hope this makes sense!
Hi Meabh, I'm not familiar with such tools, but maybe you can merge the original files with read-count back to your result file -> "Join two Datasets side by side on a specified field". Cheers, Bjoern
I am new to Galaxy and am using it for analysis of BLAST results and phylogeny. I have uploaded a file with contig names, the BLAST GI number, and the total read count for each contig. When I use Galaxy to 'Summarize taxonomy' and 'Draw phylogeny', I have lost the total read counts. Eg. In the results of these it tells me how many contigs belong to Fungi or Metazoa, whereas each contig actually has a different number of reads. Is there any way to reflect this in Galaxy? I hope this makes sense! ___________________________________________________________ The Galaxy User list should be used for the discussion of Galaxy analysis and other features on the public server at usegalaxy.org. Please keep all replies on the list by using "reply all" in your mail client. For discussion of local Galaxy instances and the Galaxy source code, please use the Galaxy Development list:
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participants (2)
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Bjoern Gruening
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Meabh Beatty