Hi Larry, you can build custom genomes in Galaxy. More details in the Galaxy wiki: https://wiki.galaxyproject.org/Learn/CustomGenomes Cheers, Bjoern

Hi

I have a question about the use of BedTools in Galaxy. I am trying to obtain a graph or table of the number of RNA reads mapped to different locations on my custom genome. When I try running "Create a Bedgraph of Genome Coverage" it requires selection of the "Genome Build" from a dropdown list. Is it possible for the program to utilize a custom genome not in this list?

Larry Simpson UCLA

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