Is it possible to upload files from the NCBI sra data base, then use fastq-dump from the sra toolit within galaxy? If not, could these tools be added?
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Hello,
Have you seen the tool ' Get Data -> ENA SRA"?
Once a project is searched for, you will find direct links to import the FASTQ data direct into Galaxy. Both the original submitted and the processed archive format in many cases.
Best,
Jen Galaxy team
On 6/16/13 7:54 AM, Murphy, Theresa wrote:
Is it possible to upload files from the NCBI sra data base, then use fastq-dump from the sra toolit within galaxy? If not, could these tools be added?
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Jennifer Jackson -
Murphy, Theresa