Unable to import dataset from history into data library
Dear Galaxy Users, Since I've updated my Galaxy version I'm unable to import any dataset from my history into my data library. It returns a message of e.g. "Invalid item id (1464) specified". I then did a complete new test installation to make sure that this problem wasn't because of the update. But the error still remains. I've included a screen shot in which the error is reported. When I queried the database the dataset id does exist in the history_dataset_association table. I went through the paster.log file and found the following warning message: Unknown library item type: <class 'galaxy.model. HistoryDatasetAssociation'>. Can it be that this class is not loaded or found? Is anyone experiencing the same problem? Thanks,
Hello, I am not able to reproduce this problem, and in fact, the message being displayed looks like it comes from very old code ( this particular message "Invalid item id..." is no longer in the most recent version of the code. From where are you getting your updates? You should be getting them from here: hg clone https://<your account>@bitbucket.org/galaxy/galaxy-dist To make sure you are running the latest distribution, go to your Galaxy root directory and type: hg heads and you should see 4354 d681ef7538ed On Nov 10, 2010, at 8:08 AM, gerrit wrote:
Dear Galaxy Users,
Since I've updated my Galaxy version I'm unable to import any dataset from my history into my data library. It returns a message of e.g. "Invalid item id (1464) specified".
I then did a complete new test installation to make sure that this problem wasn't because of the update. But the error still remains. I've included a screen shot in which the error is reported.
When I queried the database the dataset id does exist in the history_dataset_association table.
I went through the paster.log file and found the following warning message: Unknown library item type: <class 'galaxy.model. HistoryDatasetAssociation'>. Can it be that this class is not loaded or found?
Is anyone experiencing the same problem?
Thanks, <import_history_dataset_error.jpg>_______________________________________________ galaxy-user mailing list galaxy-user@lists.bx.psu.edu http://lists.bx.psu.edu/listinfo/galaxy-user
Greg Von Kuster Galaxy Development Team greg@bx.psu.edu
Hi Greg, It is a long time since I've read the documentation on your site, but since I've started with galaxy I checked it out like this: hg clone http://www.bx.psu.edu/hg/galaxy galaxy_dist The strange thing is then when I run "hg heads" it shows the exact version which you have. ----------------------- changeset: 4354:d681ef7538ed tag: tip user: Greg Von Kuster <greg@bx.psu.edu> date: Wed Sep 29 12:39:39 2010 -0400 summary: Fix for rendering hidden widget field values associated with library templates whose fields are displayed on the upload form when importing a dataset from the current history. Added new functional test to cover behavior. ----------------------- I will test a checkout with the other update site. Thanks, Gerrit On Wed, Nov 10, 2010 at 4:22 PM, Greg Von Kuster <greg@bx.psu.edu> wrote:
Hello,
I am not able to reproduce this problem, and in fact, the message being displayed looks like it comes from very old code ( this particular message "Invalid item id..." is no longer in the most recent version of the code. From where are you getting your updates? You should be getting them from here:
hg clone https://<your account>@bitbucket.org/galaxy/galaxy-dist <https://%3Cyour+account%3E@bitbucket.org/galaxy/galaxy-dist>
To make sure you are running the latest distribution, go to your Galaxy root directory and type:
hg heads
and you should see
4354 d681ef7538ed
On Nov 10, 2010, at 8:08 AM, gerrit wrote:
Dear Galaxy Users,
Since I've updated my Galaxy version I'm unable to import any dataset from my history into my data library. It returns a message of e.g. "Invalid item id (1464) specified".
I then did a complete new test installation to make sure that this problem wasn't because of the update. But the error still remains. I've included a screen shot in which the error is reported.
When I queried the database the dataset id does exist in the history_dataset_association table.
I went through the paster.log file and found the following warning message: Unknown library item type: <class 'galaxy.model. HistoryDatasetAssociation'>. Can it be that this class is not loaded or found?
Is anyone experiencing the same problem?
Thanks, <import_history_dataset_error.jpg> _______________________________________________ galaxy-user mailing list galaxy-user@lists.bx.psu.edu http://lists.bx.psu.edu/listinfo/galaxy-user
Greg Von Kuster Galaxy Development Team greg@bx.psu.edu
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